Modify organisms of multi-assay experiment object — mae_pick_organisms • animalcules

Modify organisms of multi-assay experiment object

mae_pick_organisms(MAE, isolate_organisms = NULL, discard_organisms = NULL)

Arguments

MAE: A multi-assay experiment object
isolate_organisms: Isolate specific organisms e.g. ti|001, ti|002
discard_organisms: Discard specific organisms e.g. ti|001, ti|002

Value

A multi-assay experiment object

Examples

data_dir <- system.file("extdata/MAE.rds", package = "animalcules")
toy_data <- readRDS(data_dir)
subset <- mae_pick_organisms(toy_data,
  isolate_organisms = c("ti|001", "ti|002")
)