Beta diversity heatmap

diversity_beta_heatmap(
  MAE,
  tax_level,
  input_beta_method,
  input_bdhm_select_conditions,
  input_bdhm_sort_by = c("nosort", "conditions")
)

Arguments

MAE: A multi-assay experiment object
tax_level: The taxon level used for organisms
input_beta_method: bray, jaccard
input_bdhm_select_conditions: Which condition to group samples
input_bdhm_sort_by: Sorting option e.g. "nosort", "conditions"

Value

A plotly object

Examples

data_dir <- system.file("extdata/MAE.rds", package = "animalcules")
toy_data <- readRDS(data_dir)
p <- diversity_beta_heatmap(toy_data,
  tax_level = "genus",
  input_beta_method = "bray",
  input_bdhm_select_conditions = "DISEASE",
  input_bdhm_sort_by = "conditions"
)
#> No scatter mode specifed:
#>   Setting the mode to markers
#>   Read more about this attribute -> https://plotly.com/r/reference/#scatter-mode
p