Beta diversity boxplot

Source: R/diversity_beta_boxplot.R

Beta diversity boxplot

diversity_beta_boxplot(
  MAE,
  tax_level,
  input_beta_method,
  input_select_beta_condition
)

Arguments

MAE

A multi-assay experiment object

tax_level

The taxon level used for organisms

input_beta_method

bray, jaccard

input_select_beta_condition

Which condition to group samples

Value

A plotly object

Examples

data_dir <- system.file("extdata/MAE.rds", package = "animalcules")
toy_data <- readRDS(data_dir)
p <- diversity_beta_boxplot(toy_data,
  tax_level = "genus",
  input_beta_method = "bray",
  input_select_beta_condition = "DISEASE"
)
p