Helper Function for MetaScope ID — locations • MetaScope

Used to create plots of genome coverage for any number of accession numbers

Usage

locations(
  which_taxid,
  which_genome,
  accessions,
  taxids,
  reads,
  out_base,
  out_dir
)

Arguments

which_taxid: Which taxid to plot
which_genome: Which genome to plot
accessions: List of accessions from metascope_id()
taxids: List of accessions from metascope_id()
reads: List of reads from input file
out_base: The basename of the input file
out_dir: The path to the input file

Value

A plot of the read coverage for a given genome