This object is a named vector of multiple options that can be chosen for
functions that involve alignment with Rsubread, namely align_target()
and filter_host(). Both functions take an object for the parameter
settings, which are provided by align_details by default, or
may be given by a user-created object containing the same information.
Usage
data(align_details)Details
The default options included in align_details are type = "dna",
maxMismatches = 3, nsubreads = 10, phredOffset = 33,
unique = FALSE, and nBestLocations = 16. Full descriptions of
these parameters can be read by accessing ?Rsubread::align.
Examples
data("align_details")