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Modeling with GEEs and LMMs

Aubrey R. Odom

Program in Bioinformatics, Boston University, Boston, MA

January 30, 2024

Modeling.Rmd

Modeling with LegATo

Coming soon.

GEEs

LMMs

Session Info 

## R version 4.3.1 (2023-06-16)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: AlmaLinux 8.9 (Midnight Oncilla)
## 
## Matrix products: default
## BLAS:   /share/pkg.8/r/4.3.1/install/lib64/R/lib/libRblas.so 
## LAPACK: /share/pkg.8/r/4.3.1/install/lib64/R/lib/libRlapack.so;  LAPACK version 3.11.0
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## time zone: America/New_York
## tzcode source: system (glibc)
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] BiocStyle_2.28.0
## 
## loaded via a namespace (and not attached):
##  [1] vctrs_0.6.5         cli_3.6.2           knitr_1.45         
##  [4] rlang_1.1.3         xfun_0.41           stringi_1.8.3      
##  [7] purrr_1.0.2         textshaping_0.3.6   jsonlite_1.8.8     
## [10] glue_1.7.0          htmltools_0.5.7     ragg_1.2.5         
## [13] sass_0.4.8          rmarkdown_2.25      evaluate_0.23      
## [16] jquerylib_0.1.4     fastmap_1.1.1       yaml_2.3.8         
## [19] lifecycle_1.0.4     memoise_2.0.1       bookdown_0.34      
## [22] BiocManager_1.30.22 stringr_1.5.1       compiler_4.3.1     
## [25] fs_1.6.3            rstudioapi_0.15.0   systemfonts_1.0.4  
## [28] digest_0.6.34       R6_2.5.1            magrittr_2.0.3     
## [31] bslib_0.6.1         tools_4.3.1         pkgdown_2.0.7      
## [34] cachem_1.0.8        desc_1.4.3