This function takes a MultiAssayExperiment and outputs an array of
temporal intra-subject correlation matrices.
Arguments
- dat
A
MultiAssayExperimentobject specially formatted as an animalcules output.- unit_var
a numeric vector of subject.
- method
an option of the correlation method ("pearson", "kendall", "spearman"). The default method is "kendall".
- fill_na
a number between 0 and 1 to fill the missing value. The default value is 0.
Examples
dat <- system.file("extdata/MAE_small.RDS", package = "LegATo") |> readRDS()
output <- tscor(dat, unit_var = "Subject", method = "spearman")
head(output)
#> , , S1
#>
#> Acinetobacter_beijerinckii Acinetobacter_bouvetii
#> Acinetobacter_beijerinckii 1.0000000 -0.7826238
#> Acinetobacter_bouvetii 0.1025978 0.2000000
#> Acinetobacter_guillouiae -0.6315789 -0.8944272
#> Acinetobacter_gyllenbergii 0.0000000 0.0000000
#> Acinetobacter_indicus -0.2051957 0.3535534
#> Acinetobacter_johnsonii 0.1315789 -0.1538968
#> Acinetobacter_guillouiae Acinetobacter_gyllenbergii
#> Acinetobacter_beijerinckii 0.9210526 0.3535534
#> Acinetobacter_bouvetii -0.1813691 -0.9486833
#> Acinetobacter_guillouiae 0.7254763 0.1118034
#> Acinetobacter_gyllenbergii 0.8207827 0.7071068
#> Acinetobacter_indicus 0.3627381 -0.7000000
#> Acinetobacter_johnsonii -0.1813691 -0.2236068
#> Acinetobacter_indicus Acinetobacter_johnsonii
#> Acinetobacter_beijerinckii 0.3077935 -0.2500000
#> Acinetobacter_bouvetii 0.6488857 -0.3535534
#> Acinetobacter_guillouiae 0.0000000 0.0000000
#> Acinetobacter_gyllenbergii -0.7105263 -0.3952847
#> Acinetobacter_indicus -0.2368421 1.0000000
#> Acinetobacter_johnsonii -0.7894737 -0.2500000
#> Acinetobacter_parvus Acinetobacter_pittii
#> Acinetobacter_beijerinckii -0.2500000 0.3000000
#> Acinetobacter_bouvetii 1.0000000 -0.7071068
#> Acinetobacter_guillouiae -0.5441072 0.0000000
#> Acinetobacter_gyllenbergii 0.0000000 -0.8944272
#> Acinetobacter_indicus -0.2500000 0.8944272
#> Acinetobacter_johnsonii 0.0000000 0.0000000
#> Acinetobacter_radioresistens Acinetobacter_towneri
#> Acinetobacter_beijerinckii -0.3952847 -0.8029551
#> Acinetobacter_bouvetii -0.3354102 -0.5161854
#> Acinetobacter_guillouiae -0.6250000 -0.8603090
#> Acinetobacter_gyllenbergii -0.3952847 -0.3952847
#> Acinetobacter_indicus 0.5000000 -0.3952847
#> Acinetobacter_johnsonii -0.6250000 -0.3952847
#> Acinetobacter_ursingii Aeromonas_hydrophila
#> Acinetobacter_beijerinckii 0.3354102 -0.5441072
#> Acinetobacter_bouvetii -0.7071068 -0.2500000
#> Acinetobacter_guillouiae 0.0000000 -0.5441072
#> Acinetobacter_gyllenbergii 0.1000000 -0.2500000
#> Acinetobacter_indicus 0.1000000 -0.2500000
#> Acinetobacter_johnsonii -0.2236068 0.7905694
#> Aeromonas_salmonicida Alkalihalophilus_pseudofirmus
#> Acinetobacter_beijerinckii 0.3952847 0.3952847
#> Acinetobacter_bouvetii -0.3952847 1.0000000
#> Acinetobacter_guillouiae -0.2500000 -0.6250000
#> Acinetobacter_gyllenbergii -0.2500000 -0.3952847
#> Acinetobacter_indicus 0.7254763 -0.6250000
#> Acinetobacter_johnsonii -0.2500000 -0.3952847
#> Brucella_anthropi Brucella_melitensis
#> Acinetobacter_beijerinckii -0.2500000 0.6708204
#> Acinetobacter_bouvetii -0.2500000 0.6708204
#> Acinetobacter_guillouiae -0.2500000 -0.6250000
#> Acinetobacter_gyllenbergii -0.3952847 -0.6250000
#> Acinetobacter_indicus 0.3535534 -0.6250000
#> Acinetobacter_johnsonii -0.2500000 0.2236068
#> Corynebacterium_accolens
#> Acinetobacter_beijerinckii 1.0000000
#> Acinetobacter_bouvetii -0.2500000
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii 0.0000000
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii -0.2500000
#> Corynebacterium_ammoniagenes
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii 0.6882472
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii 0.6708204
#> Acinetobacter_indicus -0.8603090
#> Acinetobacter_johnsonii 0.2236068
#> Corynebacterium_appendicis
#> Acinetobacter_beijerinckii 1.0000000
#> Acinetobacter_bouvetii 0.3952847
#> Acinetobacter_guillouiae 1.0000000
#> Acinetobacter_gyllenbergii 0.7071068
#> Acinetobacter_indicus -0.3952847
#> Acinetobacter_johnsonii 0.3535534
#> Corynebacterium_argentoratense
#> Acinetobacter_beijerinckii 0.1250000
#> Acinetobacter_bouvetii 0.7826238
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii -0.3952847
#> Acinetobacter_indicus 0.8029551
#> Acinetobacter_johnsonii -0.3952847
#> Corynebacterium_aurimucosum Corynebacterium_callunae
#> Acinetobacter_beijerinckii 0.3354102 -0.22360680
#> Acinetobacter_bouvetii -0.4472136 0.39528471
#> Acinetobacter_guillouiae 0.9000000 -0.39528471
#> Acinetobacter_gyllenbergii 0.7071068 -0.41247896
#> Acinetobacter_indicus 0.0000000 0.11180340
#> Acinetobacter_johnsonii -0.5270463 -0.05892557
#> Corynebacterium_casei Corynebacterium_ciconiae
#> Acinetobacter_beijerinckii -0.9000000 -0.7071068
#> Acinetobacter_bouvetii -0.2867697 -0.3952847
#> Acinetobacter_guillouiae -0.8944272 0.7071068
#> Acinetobacter_gyllenbergii 0.2294157 -0.3952847
#> Acinetobacter_indicus -0.3952847 1.0000000
#> Acinetobacter_johnsonii 0.4472136 -0.2500000
#> Corynebacterium_deserti Corynebacterium_durum
#> Acinetobacter_beijerinckii -0.2500000 -0.54410719
#> Acinetobacter_bouvetii 0.0000000 0.00000000
#> Acinetobacter_guillouiae -0.2500000 -0.45962736
#> Acinetobacter_gyllenbergii -0.2500000 0.45883147
#> Acinetobacter_indicus -0.7071068 0.36273813
#> Acinetobacter_johnsonii -0.2500000 0.05129892
#> Corynebacterium_efficiens Corynebacterium_falsenii
#> Acinetobacter_beijerinckii 0.1863390 -0.1813691
#> Acinetobacter_bouvetii -0.7071068 -0.2500000
#> Acinetobacter_guillouiae -0.5590170 -0.3535534
#> Acinetobacter_gyllenbergii -0.2500000 0.0000000
#> Acinetobacter_indicus -0.1813691 -0.3952847
#> Acinetobacter_johnsonii 0.3627381 1.0000000
#> Corynebacterium_freneyi Corynebacterium_genitalium
#> Acinetobacter_beijerinckii -0.3952847 0.7905694
#> Acinetobacter_bouvetii -0.2500000 0.8944272
#> Acinetobacter_guillouiae 1.0000000 0.3952847
#> Acinetobacter_gyllenbergii -0.5441072 -0.3952847
#> Acinetobacter_indicus 0.0000000 0.1250000
#> Acinetobacter_johnsonii -0.2500000 0.5000000
#> Corynebacterium_glutamicum
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii 1.0000000
#> Acinetobacter_guillouiae -0.7071068
#> Acinetobacter_gyllenbergii -0.3952847
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii -0.3952847
#> Corynebacterium_glyciniphilum
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii -0.1813691
#> Acinetobacter_guillouiae 0.0000000
#> Acinetobacter_gyllenbergii -0.5441072
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii -0.2500000
#> Corynebacterium_jeikeium Corynebacterium_lactis
#> Acinetobacter_beijerinckii 0.3077935 -0.10814761
#> Acinetobacter_bouvetii 0.1118034 0.05407381
#> Acinetobacter_guillouiae 0.3535534 -0.55901699
#> Acinetobacter_gyllenbergii 0.7071068 0.05407381
#> Acinetobacter_indicus -0.2000000 -0.55901699
#> Acinetobacter_johnsonii -0.2000000 0.18633900
#> Corynebacterium_lipophiloflavum
#> Acinetobacter_beijerinckii 1.0000000
#> Acinetobacter_bouvetii -0.3952847
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii 1.0000000
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii 0.0000000
#> Corynebacterium_maris Corynebacterium_matruchotii
#> Acinetobacter_beijerinckii -0.05735393 1.00000000
#> Acinetobacter_bouvetii 0.72547625 0.36273813
#> Acinetobacter_guillouiae 0.45883147 0.36273813
#> Acinetobacter_gyllenbergii -0.86030900 0.36273813
#> Acinetobacter_indicus -0.54410719 0.34412360
#> Acinetobacter_johnsonii -0.86030900 0.05129892
#> Corynebacterium_nuruki Corynebacterium_otitidis
#> Acinetobacter_beijerinckii -0.2500000 0.7254763
#> Acinetobacter_bouvetii 0.0000000 1.0000000
#> Acinetobacter_guillouiae 0.0000000 -0.2500000
#> Acinetobacter_gyllenbergii -0.3952847 -0.3952847
#> Acinetobacter_indicus -0.3952847 0.0000000
#> Acinetobacter_johnsonii -0.3952847 -0.2500000
#> Corynebacterium_pseudodiphtheriticum
#> Acinetobacter_beijerinckii -0.39528471
#> Acinetobacter_bouvetii 0.79056942
#> Acinetobacter_guillouiae -0.05735393
#> Acinetobacter_gyllenbergii -0.39528471
#> Acinetobacter_indicus -0.22360680
#> Acinetobacter_johnsonii -0.66688593
#> Corynebacterium_pyruviciproducens
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii -0.2500000
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus -0.7071068
#> Acinetobacter_johnsonii -0.3952847
#> Corynebacterium_sphenisci
#> Acinetobacter_beijerinckii 1.0000000
#> Acinetobacter_bouvetii -0.3952847
#> Acinetobacter_guillouiae -0.7071068
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus 1.0000000
#> Acinetobacter_johnsonii -0.5441072
#> Corynebacterium_terpenotabidum
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii -0.3952847
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii -0.7071068
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii -0.2500000
#> Corynebacterium_timonense
#> Acinetobacter_beijerinckii 0.7905694
#> Acinetobacter_bouvetii 0.7071068
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus 0.7453560
#> Acinetobacter_johnsonii 0.0000000
#> Corynebacterium_tuscaniense
#> Acinetobacter_beijerinckii -0.3535534
#> Acinetobacter_bouvetii -0.6000000
#> Acinetobacter_guillouiae -0.5441072
#> Acinetobacter_gyllenbergii -0.7071068
#> Acinetobacter_indicus 0.3627381
#> Acinetobacter_johnsonii -0.2500000
#> Corynebacterium_urealyticum
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii -0.3535534
#> Acinetobacter_guillouiae 0.7905694
#> Acinetobacter_gyllenbergii 0.0000000
#> Acinetobacter_indicus 0.3952847
#> Acinetobacter_johnsonii -0.2500000
#> Corynebacterium_variabile Corynebacterium_xerosis
#> Acinetobacter_beijerinckii -0.3952847 -0.7071068
#> Acinetobacter_bouvetii -0.3952847 -0.2500000
#> Acinetobacter_guillouiae 0.3441236 -0.2500000
#> Acinetobacter_gyllenbergii -0.3952847 0.1863390
#> Acinetobacter_indicus -0.3952847 0.3952847
#> Acinetobacter_johnsonii -0.1118034 -0.2500000
#> Cutibacterium_avidum Delftia_acidovorans
#> Acinetobacter_beijerinckii -0.2500000 0.0000000
#> Acinetobacter_bouvetii 0.7453560 -0.7254763
#> Acinetobacter_guillouiae 0.0000000 1.0000000
#> Acinetobacter_gyllenbergii 0.1863390 -0.7071068
#> Acinetobacter_indicus -0.2500000 -0.5441072
#> Acinetobacter_johnsonii 0.7254763 -0.3952847
#> Dolosigranulum_pigrum Enterobacter_cloacae
#> Acinetobacter_beijerinckii -0.9000000 0.6882472
#> Acinetobacter_bouvetii 0.3354102 -0.5441072
#> Acinetobacter_guillouiae -0.3535534 0.8029551
#> Acinetobacter_gyllenbergii 0.7071068 -0.5441072
#> Acinetobacter_indicus -0.3590924 -0.5441072
#> Acinetobacter_johnsonii 0.5642881 0.7254763
#> Enterobacter_hormaechei Escherichia_coli
#> Acinetobacter_beijerinckii -0.7071068 1.0000000
#> Acinetobacter_bouvetii 0.3535534 1.0000000
#> Acinetobacter_guillouiae 0.6708204 0.3535534
#> Acinetobacter_gyllenbergii -0.7071068 0.3535534
#> Acinetobacter_indicus 0.4472136 0.1863390
#> Acinetobacter_johnsonii 0.3535534 -0.2500000
#> Haemophilus_influenzae Haemophilus_sputorum
#> Acinetobacter_beijerinckii -0.5441072 0.2000000
#> Acinetobacter_bouvetii -0.5441072 0.3000000
#> Acinetobacter_guillouiae 0.3627381 -0.7071068
#> Acinetobacter_gyllenbergii 0.7071068 0.7071068
#> Acinetobacter_indicus -0.2500000 0.7071068
#> Acinetobacter_johnsonii 1.0000000 0.7071068
#> Kocuria_rhizophila Listeria_floridensis
#> Acinetobacter_beijerinckii 0.8029551 -0.7071068
#> Acinetobacter_bouvetii -0.5642881 -0.2500000
#> Acinetobacter_guillouiae -0.3441236 0.0000000
#> Acinetobacter_gyllenbergii -0.2631579 -0.3952847
#> Acinetobacter_indicus 0.9176629 -0.2500000
#> Acinetobacter_johnsonii -0.5441072 -0.2500000
#> Listeria_grayi Listeria_monocytogenes
#> Acinetobacter_beijerinckii 0.0000000 0.3535534
#> Acinetobacter_bouvetii 0.1118034 -0.4103913
#> Acinetobacter_guillouiae -0.3535534 -0.3535534
#> Acinetobacter_gyllenbergii -0.5642881 0.1538968
#> Acinetobacter_indicus 0.3535534 -0.2051957
#> Acinetobacter_johnsonii 0.3535534 0.3627381
#> Moraxella_atlantae Moraxella_caprae
#> Acinetobacter_beijerinckii -0.2368421 0.1250000
#> Acinetobacter_bouvetii 0.4442617 0.3441236
#> Acinetobacter_guillouiae 0.3627381 0.4472136
#> Acinetobacter_gyllenbergii 0.9210526 0.3952847
#> Acinetobacter_indicus -0.1538968 0.8750000
#> Acinetobacter_johnsonii 0.2051957 -0.2236068
#> Moraxella_cuniculi Moraxella_porci
#> Acinetobacter_beijerinckii 0.7254763 0.1250000
#> Acinetobacter_bouvetii 0.3627381 -0.3952847
#> Acinetobacter_guillouiae -0.2500000 -0.8944272
#> Acinetobacter_gyllenbergii 0.3535534 0.4472136
#> Acinetobacter_indicus 0.3535534 0.3227486
#> Acinetobacter_johnsonii -0.2500000 -0.1250000
#> Mycoplasma_genitalium Mycoplasma_testudinis
#> Acinetobacter_beijerinckii -0.2500000 -0.3952847
#> Acinetobacter_bouvetii -0.2500000 1.0000000
#> Acinetobacter_guillouiae -0.2500000 0.3952847
#> Acinetobacter_gyllenbergii -0.2500000 -0.5441072
#> Acinetobacter_indicus -0.2500000 0.3627381
#> Acinetobacter_johnsonii -0.5441072 -0.6123724
#> Noviherbaspirillum_massiliense Other
#> Acinetobacter_beijerinckii 0.8249579 0.36273813
#> Acinetobacter_bouvetii -0.3952847 -0.54410719
#> Acinetobacter_guillouiae -0.3952847 -0.54410719
#> Acinetobacter_gyllenbergii -0.3952847 -0.20519567
#> Acinetobacter_indicus -0.6250000 0.13157895
#> Acinetobacter_johnsonii 0.9176629 0.02631579
#> Paracoccus_aminophilus Paracoccus_denitrificans
#> Acinetobacter_beijerinckii -0.6123724 0.3952847
#> Acinetobacter_bouvetii -0.6123724 -0.2500000
#> Acinetobacter_guillouiae 0.4082483 -0.3952847
#> Acinetobacter_gyllenbergii 0.8885233 -0.2500000
#> Acinetobacter_indicus 0.6454972 -0.2500000
#> Acinetobacter_johnsonii -0.6123724 -0.2500000
#> Pseudomonas_fulva Pseudomonas_indica
#> Acinetobacter_beijerinckii -0.7071068 0.7071068
#> Acinetobacter_bouvetii 0.7071068 0.7071068
#> Acinetobacter_guillouiae 0.1118034 0.6000000
#> Acinetobacter_gyllenbergii -0.7071068 0.3000000
#> Acinetobacter_indicus 0.3354102 0.3689324
#> Acinetobacter_johnsonii 0.7071068 -0.7071068
#> Pseudomonas_mendocina Pseudomonas_nitroreducens
#> Acinetobacter_beijerinckii 0.0000000 0.7071068
#> Acinetobacter_bouvetii 0.7254763 0.7071068
#> Acinetobacter_guillouiae 0.7254763 -0.2500000
#> Acinetobacter_gyllenbergii 0.3535534 1.0000000
#> Acinetobacter_indicus 1.0000000 1.0000000
#> Acinetobacter_johnsonii -0.2500000 1.0000000
#> Pseudomonas_protegens Pseudomonas_putida
#> Acinetobacter_beijerinckii 0.3952847 0.1538968
#> Acinetobacter_bouvetii 0.0000000 0.7254763
#> Acinetobacter_guillouiae -0.3952847 0.1315789
#> Acinetobacter_gyllenbergii -0.5441072 -0.5161854
#> Acinetobacter_indicus 0.7905694 0.0000000
#> Acinetobacter_johnsonii -0.2500000 -0.5441072
#> Pseudomonas_resinovorans Pseudomonas_syringae
#> Acinetobacter_beijerinckii 0.0000000 1.0000000
#> Acinetobacter_bouvetii -0.6250000 0.3627381
#> Acinetobacter_guillouiae -0.3952847 -0.2500000
#> Acinetobacter_gyllenbergii 0.3441236 -0.5441072
#> Acinetobacter_indicus -0.3952847 0.7254763
#> Acinetobacter_johnsonii -0.3952847 -0.1025978
#> Staphylococcus_aureus Staphylococcus_capitis
#> Acinetobacter_beijerinckii -0.4616903 -0.6454972
#> Acinetobacter_bouvetii 0.2886751 0.1480872
#> Acinetobacter_guillouiae 0.0000000 -0.2886751
#> Acinetobacter_gyllenbergii 0.3590924 -0.4082483
#> Acinetobacter_indicus 0.5000000 -0.6454972
#> Acinetobacter_johnsonii 0.8000000 0.8660254
#> Staphylococcus_epidermidis
#> Acinetobacter_beijerinckii 0.0000000
#> Acinetobacter_bouvetii -0.5441072
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii -0.3535534
#> Acinetobacter_indicus -0.3535534
#> Acinetobacter_johnsonii 1.0000000
#> Staphylococcus_haemolyticus
#> Acinetobacter_beijerinckii 0.3441236
#> Acinetobacter_bouvetii -0.5441072
#> Acinetobacter_guillouiae 0.4103913
#> Acinetobacter_gyllenbergii -0.5642881
#> Acinetobacter_indicus -0.4442617
#> Acinetobacter_johnsonii -0.2867697
#> Staphylococcus_lugdunensis
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii 1.0000000
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii 1.0000000
#> Acinetobacter_indicus 1.0000000
#> Acinetobacter_johnsonii 0.3627381
#> Staphylococcus_pseudintermedius
#> Acinetobacter_beijerinckii 0.67082039
#> Acinetobacter_bouvetii 0.35355339
#> Acinetobacter_guillouiae 0.89442719
#> Acinetobacter_gyllenbergii -0.97467943
#> Acinetobacter_indicus -0.05129892
#> Acinetobacter_johnsonii -0.28867513
#> Staphylococcus_saprophyticus Staphylococcus_simiae
#> Acinetobacter_beijerinckii -0.1581139 -0.2500000
#> Acinetobacter_bouvetii 0.0000000 -0.2500000
#> Acinetobacter_guillouiae 0.0000000 -0.2500000
#> Acinetobacter_gyllenbergii -0.7071068 0.3535534
#> Acinetobacter_indicus 0.6708204 0.0000000
#> Acinetobacter_johnsonii 0.2051957 -0.5441072
#> Streptococcus_anginosus Streptococcus_cristatus
#> Acinetobacter_beijerinckii -0.2500000 -0.3952847
#> Acinetobacter_bouvetii -0.2500000 -0.2500000
#> Acinetobacter_guillouiae -0.2500000 -0.3952847
#> Acinetobacter_gyllenbergii 0.7254763 1.0000000
#> Acinetobacter_indicus -0.3952847 -0.2500000
#> Acinetobacter_johnsonii -0.2500000 -0.2500000
#> Streptococcus_gallolyticus Streptococcus_mitis
#> Acinetobacter_beijerinckii 0.0000000 0.7071068
#> Acinetobacter_bouvetii 0.3627381 0.7071068
#> Acinetobacter_guillouiae 0.3441236 0.0000000
#> Acinetobacter_gyllenbergii 0.0000000 0.0000000
#> Acinetobacter_indicus 0.3441236 -0.3162278
#> Acinetobacter_johnsonii 0.3627381 0.0000000
#> Streptococcus_mutans Streptococcus_parasanguinis
#> Acinetobacter_beijerinckii -0.54410719 0.6000000
#> Acinetobacter_bouvetii 0.45883147 0.5000000
#> Acinetobacter_guillouiae -0.05735393 0.3535534
#> Acinetobacter_gyllenbergii -0.44721360 0.0000000
#> Acinetobacter_indicus 0.39528471 0.0000000
#> Acinetobacter_johnsonii -0.39528471 0.0000000
#> Streptococcus_pyogenes Streptococcus_sanguinis
#> Acinetobacter_beijerinckii -0.6250000 0.3354102
#> Acinetobacter_bouvetii -0.4472136 -0.3952847
#> Acinetobacter_guillouiae 1.0000000 -0.2867697
#> Acinetobacter_gyllenbergii -0.2867697 1.0000000
#> Acinetobacter_indicus -0.6250000 0.3952847
#> Acinetobacter_johnsonii -0.3952847 0.7905694
#> Streptococcus_sobrinus Streptococcus_suis
#> Acinetobacter_beijerinckii 0.6123724 0.3952847
#> Acinetobacter_bouvetii -0.3952847 0.9176629
#> Acinetobacter_guillouiae -0.2500000 0.7905694
#> Acinetobacter_gyllenbergii -0.5441072 0.0000000
#> Acinetobacter_indicus -0.2500000 0.8029551
#> Acinetobacter_johnsonii -0.2500000 -0.5441072
#> Streptococcus_thermophilus Weissella_koreensis
#> Acinetobacter_beijerinckii -0.5441072 -0.3952847
#> Acinetobacter_bouvetii 0.4082483 0.3627381
#> Acinetobacter_guillouiae -0.2500000 0.7071068
#> Acinetobacter_gyllenbergii 0.7254763 -0.2500000
#> Acinetobacter_indicus 0.3535534 0.3952847
#> Acinetobacter_johnsonii 0.3535534 0.0000000
#> Weissella_oryzae Weissella_paramesenteroides
#> Acinetobacter_beijerinckii 0.7254763 -0.3952847
#> Acinetobacter_bouvetii 0.3627381 1.0000000
#> Acinetobacter_guillouiae -0.2500000 0.0000000
#> Acinetobacter_gyllenbergii 0.3535534 0.3535534
#> Acinetobacter_indicus 0.3535534 -0.4082483
#> Acinetobacter_johnsonii -0.2500000 0.7905694
#>
#> , , S10
#>
#> Acinetobacter_beijerinckii Acinetobacter_bouvetii
#> Acinetobacter_beijerinckii -0.5441072 0.6882472
#> Acinetobacter_bouvetii 0.3627381 -0.5441072
#> Acinetobacter_guillouiae -0.5441072 0.3441236
#> Acinetobacter_gyllenbergii 0.3627381 -0.2894737
#> Acinetobacter_indicus 0.3627381 -0.6315789
#> Acinetobacter_johnsonii 1.0000000 0.4442617
#> Acinetobacter_guillouiae Acinetobacter_gyllenbergii
#> Acinetobacter_beijerinckii 0.08111071 1.0000000
#> Acinetobacter_bouvetii 0.36273813 0.3627381
#> Acinetobacter_guillouiae 0.36273813 1.0000000
#> Acinetobacter_gyllenbergii 0.00000000 -0.2500000
#> Acinetobacter_indicus -0.28676967 0.0000000
#> Acinetobacter_johnsonii -0.26315789 -0.3535534
#> Acinetobacter_indicus Acinetobacter_johnsonii
#> Acinetobacter_beijerinckii -0.2500000 -0.5000000
#> Acinetobacter_bouvetii 0.3952847 -0.9000000
#> Acinetobacter_guillouiae 0.3627381 0.4472136
#> Acinetobacter_gyllenbergii 0.3952847 0.0000000
#> Acinetobacter_indicus -0.2500000 0.3535534
#> Acinetobacter_johnsonii -0.2500000 -0.4000000
#> Acinetobacter_parvus Acinetobacter_pittii
#> Acinetobacter_beijerinckii -0.35355339 -0.3535534
#> Acinetobacter_bouvetii -0.70710678 0.7071068
#> Acinetobacter_guillouiae 0.70000000 -0.3535534
#> Acinetobacter_gyllenbergii 0.35355339 -0.2236068
#> Acinetobacter_indicus 0.61558701 -0.7071068
#> Acinetobacter_johnsonii -0.05129892 0.4472136
#> Acinetobacter_radioresistens Acinetobacter_towneri
#> Acinetobacter_beijerinckii 0.3627381 0.7905694
#> Acinetobacter_bouvetii -0.7071068 0.0000000
#> Acinetobacter_guillouiae 0.7071068 -0.3952847
#> Acinetobacter_gyllenbergii -0.3952847 -0.2500000
#> Acinetobacter_indicus -0.3535534 -0.2500000
#> Acinetobacter_johnsonii 0.7071068 -0.2500000
#> Acinetobacter_ursingii Aeromonas_hydrophila
#> Acinetobacter_beijerinckii 0.0000000 1.0000000
#> Acinetobacter_bouvetii -0.7071068 0.7071068
#> Acinetobacter_guillouiae -0.8944272 0.3952847
#> Acinetobacter_gyllenbergii -0.4472136 -0.2500000
#> Acinetobacter_indicus -0.7071068 -0.5441072
#> Acinetobacter_johnsonii 0.0000000 0.3535534
#> Aeromonas_salmonicida Alkalihalophilus_pseudofirmus
#> Acinetobacter_beijerinckii -0.2500000 0.3627381
#> Acinetobacter_bouvetii -0.2500000 0.0000000
#> Acinetobacter_guillouiae -0.2500000 -0.5441072
#> Acinetobacter_gyllenbergii -0.3535534 1.0000000
#> Acinetobacter_indicus 0.3952847 0.3627381
#> Acinetobacter_johnsonii -0.3535534 0.0000000
#> Brucella_anthropi Brucella_melitensis
#> Acinetobacter_beijerinckii -0.2500000 -0.3952847
#> Acinetobacter_bouvetii -0.2500000 -0.7071068
#> Acinetobacter_guillouiae 0.3952847 -0.3535534
#> Acinetobacter_gyllenbergii -0.2500000 -0.3952847
#> Acinetobacter_indicus 1.0000000 -0.2500000
#> Acinetobacter_johnsonii 0.7071068 -0.2500000
#> Corynebacterium_accolens
#> Acinetobacter_beijerinckii 0.3952847
#> Acinetobacter_bouvetii -0.3952847
#> Acinetobacter_guillouiae -0.1118034
#> Acinetobacter_gyllenbergii -0.4472136
#> Acinetobacter_indicus 0.7905694
#> Acinetobacter_johnsonii 0.3952847
#> Corynebacterium_ammoniagenes
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii -0.3535534
#> Acinetobacter_guillouiae -0.7071068
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii -0.2500000
#> Corynebacterium_appendicis
#> Acinetobacter_beijerinckii 0.3952847
#> Acinetobacter_bouvetii -0.2500000
#> Acinetobacter_guillouiae -0.4082483
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus 0.7905694
#> Acinetobacter_johnsonii 0.7071068
#> Corynebacterium_argentoratense
#> Acinetobacter_beijerinckii 0.6708204
#> Acinetobacter_bouvetii 0.1118034
#> Acinetobacter_guillouiae -0.4472136
#> Acinetobacter_gyllenbergii -0.2236068
#> Acinetobacter_indicus -0.3952847
#> Acinetobacter_johnsonii -0.3952847
#> Corynebacterium_aurimucosum Corynebacterium_callunae
#> Acinetobacter_beijerinckii -0.2500000 -0.3952847
#> Acinetobacter_bouvetii -0.2500000 -0.1118034
#> Acinetobacter_guillouiae -0.2500000 0.7905694
#> Acinetobacter_gyllenbergii -0.5441072 0.3441236
#> Acinetobacter_indicus -0.3952847 0.1250000
#> Acinetobacter_johnsonii 0.3535534 -0.3952847
#> Corynebacterium_casei Corynebacterium_ciconiae
#> Acinetobacter_beijerinckii 0.8947368 -0.2500000
#> Acinetobacter_bouvetii 0.8029551 -0.3952847
#> Acinetobacter_guillouiae 0.7905694 -0.5441072
#> Acinetobacter_gyllenbergii 0.3952847 -0.3952847
#> Acinetobacter_indicus -0.2236068 1.0000000
#> Acinetobacter_johnsonii 0.1118034 1.0000000
#> Corynebacterium_deserti Corynebacterium_durum
#> Acinetobacter_beijerinckii 0.0000000 -0.2500000
#> Acinetobacter_bouvetii -0.3535534 -0.2500000
#> Acinetobacter_guillouiae -0.3952847 0.7071068
#> Acinetobacter_gyllenbergii -0.2500000 -0.2500000
#> Acinetobacter_indicus 1.0000000 0.7254763
#> Acinetobacter_johnsonii 0.0000000 -0.5263158
#> Corynebacterium_efficiens Corynebacterium_falsenii
#> Acinetobacter_beijerinckii -0.3952847 -0.1025978
#> Acinetobacter_bouvetii 0.3952847 0.3000000
#> Acinetobacter_guillouiae -0.3952847 -0.1000000
#> Acinetobacter_gyllenbergii -0.1250000 0.4472136
#> Acinetobacter_indicus -0.3952847 0.3000000
#> Acinetobacter_johnsonii 0.1250000 -0.2000000
#> Corynebacterium_freneyi Corynebacterium_genitalium
#> Acinetobacter_beijerinckii -0.4472136 -0.2500000
#> Acinetobacter_bouvetii -0.3000000 -0.2500000
#> Acinetobacter_guillouiae 0.7826238 -0.3952847
#> Acinetobacter_gyllenbergii -0.7071068 -0.3952847
#> Acinetobacter_indicus -0.3535534 -0.2500000
#> Acinetobacter_johnsonii 0.3535534 -0.2500000
#> Corynebacterium_glutamicum
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii 0.0000000
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus -0.5441072
#> Acinetobacter_johnsonii 0.0000000
#> Corynebacterium_glyciniphilum
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii 0.3952847
#> Acinetobacter_guillouiae 0.3952847
#> Acinetobacter_gyllenbergii 0.1118034
#> Acinetobacter_indicus 0.1250000
#> Acinetobacter_johnsonii 0.1118034
#> Corynebacterium_jeikeium Corynebacterium_lactis
#> Acinetobacter_beijerinckii 1.0000000 -0.7071068
#> Acinetobacter_bouvetii -0.2500000 0.0000000
#> Acinetobacter_guillouiae -0.2500000 0.1118034
#> Acinetobacter_gyllenbergii 0.3627381 -0.3535534
#> Acinetobacter_indicus 1.0000000 0.7071068
#> Acinetobacter_johnsonii -0.2500000 1.0000000
#> Corynebacterium_lipophiloflavum
#> Acinetobacter_beijerinckii 0.1250000
#> Acinetobacter_bouvetii -0.2236068
#> Acinetobacter_guillouiae 0.1118034
#> Acinetobacter_gyllenbergii 0.1250000
#> Acinetobacter_indicus -0.3952847
#> Acinetobacter_johnsonii 0.3952847
#> Corynebacterium_maris Corynebacterium_matruchotii
#> Acinetobacter_beijerinckii 0.3627381 0.8944272
#> Acinetobacter_bouvetii -0.5441072 0.3000000
#> Acinetobacter_guillouiae 0.2051957 0.3000000
#> Acinetobacter_gyllenbergii 0.3590924 0.0000000
#> Acinetobacter_indicus -0.5441072 -0.3535534
#> Acinetobacter_johnsonii 0.3627381 0.0000000
#> Corynebacterium_nuruki Corynebacterium_otitidis
#> Acinetobacter_beijerinckii 0.2236068 -0.5000000
#> Acinetobacter_bouvetii 0.0000000 -0.8000000
#> Acinetobacter_guillouiae 0.2886751 0.8000000
#> Acinetobacter_gyllenbergii 0.7071068 1.0000000
#> Acinetobacter_indicus 0.1118034 -0.3535534
#> Acinetobacter_johnsonii -0.4000000 0.0000000
#> Corynebacterium_pseudodiphtheriticum
#> Acinetobacter_beijerinckii -0.3535534
#> Acinetobacter_bouvetii -0.3535534
#> Acinetobacter_guillouiae 0.7071068
#> Acinetobacter_gyllenbergii 0.2051957
#> Acinetobacter_indicus 0.3354102
#> Acinetobacter_johnsonii -0.2000000
#> Corynebacterium_pyruviciproducens
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii 0.1118034
#> Acinetobacter_guillouiae 0.7905694
#> Acinetobacter_gyllenbergii 0.9176629
#> Acinetobacter_indicus 0.1250000
#> Acinetobacter_johnsonii -0.3952847
#> Corynebacterium_sphenisci
#> Acinetobacter_beijerinckii 0.3627381
#> Acinetobacter_bouvetii -0.5441072
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus 0.3535534
#> Acinetobacter_johnsonii 0.0000000
#> Corynebacterium_terpenotabidum
#> Acinetobacter_beijerinckii -0.3535534
#> Acinetobacter_bouvetii -0.1118034
#> Acinetobacter_guillouiae -0.3077935
#> Acinetobacter_gyllenbergii -0.1118034
#> Acinetobacter_indicus 0.0000000
#> Acinetobacter_johnsonii 0.0000000
#> Corynebacterium_timonense
#> Acinetobacter_beijerinckii 0.7071068
#> Acinetobacter_bouvetii 0.0000000
#> Acinetobacter_guillouiae 0.7905694
#> Acinetobacter_gyllenbergii 1.0000000
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii 0.3535534
#> Corynebacterium_tuscaniense
#> Acinetobacter_beijerinckii 0.72547625
#> Acinetobacter_bouvetii 0.00000000
#> Acinetobacter_guillouiae 0.05129892
#> Acinetobacter_gyllenbergii 0.36273813
#> Acinetobacter_indicus 0.13157895
#> Acinetobacter_johnsonii -0.28676967
#> Corynebacterium_urealyticum
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii -0.2500000
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii -0.3952847
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii -0.3952847
#> Corynebacterium_variabile Corynebacterium_xerosis
#> Acinetobacter_beijerinckii 0.2961744 0.3952847
#> Acinetobacter_bouvetii -0.8660254 -0.3535534
#> Acinetobacter_guillouiae 0.2886751 -0.3952847
#> Acinetobacter_gyllenbergii -0.6454972 1.0000000
#> Acinetobacter_indicus -0.8660254 -0.2500000
#> Acinetobacter_johnsonii 0.0000000 -0.2500000
#> Cutibacterium_avidum Delftia_acidovorans
#> Acinetobacter_beijerinckii 0.7071068 0.7071068
#> Acinetobacter_bouvetii -0.7071068 0.6000000
#> Acinetobacter_guillouiae -0.8944272 0.1118034
#> Acinetobacter_gyllenbergii 0.2236068 -0.3535534
#> Acinetobacter_indicus -0.7071068 0.1025978
#> Acinetobacter_johnsonii 0.7071068 0.6000000
#> Dolosigranulum_pigrum Enterobacter_cloacae
#> Acinetobacter_beijerinckii -0.3952847 1.0000000
#> Acinetobacter_bouvetii 0.7905694 -0.2500000
#> Acinetobacter_guillouiae 0.7905694 -0.2500000
#> Acinetobacter_gyllenbergii 0.6708204 0.3627381
#> Acinetobacter_indicus 0.1250000 1.0000000
#> Acinetobacter_johnsonii 0.6708204 -0.2500000
#> Enterobacter_hormaechei Escherichia_coli
#> Acinetobacter_beijerinckii -0.2500000 0.2236068
#> Acinetobacter_bouvetii -0.2500000 0.7000000
#> Acinetobacter_guillouiae 0.3952847 0.6000000
#> Acinetobacter_gyllenbergii -0.2500000 0.6708204
#> Acinetobacter_indicus 1.0000000 0.3535534
#> Acinetobacter_johnsonii 0.7071068 0.7071068
#> Haemophilus_influenzae Haemophilus_sputorum
#> Acinetobacter_beijerinckii -0.3535534 0.5000000
#> Acinetobacter_bouvetii 0.0000000 0.2236068
#> Acinetobacter_guillouiae 0.6000000 0.7826238
#> Acinetobacter_gyllenbergii 0.2000000 -0.3952847
#> Acinetobacter_indicus 0.7071068 0.3952847
#> Acinetobacter_johnsonii -0.3535534 -0.3952847
#> Kocuria_rhizophila Listeria_floridensis
#> Acinetobacter_beijerinckii -0.3952847 -0.7071068
#> Acinetobacter_bouvetii -0.2500000 -0.7071068
#> Acinetobacter_guillouiae 0.6123724 0.7071068
#> Acinetobacter_gyllenbergii 1.0000000 0.3535534
#> Acinetobacter_indicus -0.3952847 -0.2500000
#> Acinetobacter_johnsonii -0.7071068 -0.2500000
#> Listeria_grayi Listeria_monocytogenes
#> Acinetobacter_beijerinckii -0.3535534 -0.2500000
#> Acinetobacter_bouvetii -0.3535534 -0.3535534
#> Acinetobacter_guillouiae 0.7071068 -0.2500000
#> Acinetobacter_gyllenbergii -0.6155870 0.3627381
#> Acinetobacter_indicus -0.4472136 -0.3952847
#> Acinetobacter_johnsonii 0.2000000 -0.2500000
#> Moraxella_atlantae Moraxella_caprae
#> Acinetobacter_beijerinckii 1.0000000 0.3952847
#> Acinetobacter_bouvetii 1.0000000 -0.2500000
#> Acinetobacter_guillouiae -0.3952847 -0.3535534
#> Acinetobacter_gyllenbergii -0.2294157 -0.3535534
#> Acinetobacter_indicus 0.7905694 -0.7071068
#> Acinetobacter_johnsonii 0.1250000 -0.2500000
#> Moraxella_cuniculi Moraxella_porci
#> Acinetobacter_beijerinckii -0.3627381 -0.2236068
#> Acinetobacter_bouvetii -0.7254763 0.3441236
#> Acinetobacter_guillouiae 0.1578947 0.7905694
#> Acinetobacter_gyllenbergii -0.2051957 0.1250000
#> Acinetobacter_indicus -0.7181848 -0.3952847
#> Acinetobacter_johnsonii 0.7254763 0.4472136
#> Mycoplasma_genitalium Mycoplasma_testudinis
#> Acinetobacter_beijerinckii -0.2500000 -0.3535534
#> Acinetobacter_bouvetii -0.2500000 0.8000000
#> Acinetobacter_guillouiae 0.0000000 0.3535534
#> Acinetobacter_gyllenbergii 0.7071068 -0.3535534
#> Acinetobacter_indicus -0.3952847 0.8944272
#> Acinetobacter_johnsonii -0.5441072 0.3354102
#> Noviherbaspirillum_massiliense Other
#> Acinetobacter_beijerinckii 0.7254763 -0.6250000
#> Acinetobacter_bouvetii 0.1813691 -0.6250000
#> Acinetobacter_guillouiae 0.2867697 -0.3952847
#> Acinetobacter_gyllenbergii 0.6308933 0.3952847
#> Acinetobacter_indicus 0.2294157 0.3952847
#> Acinetobacter_johnsonii 0.7254763 -0.3952847
#> Paracoccus_aminophilus Paracoccus_denitrificans
#> Acinetobacter_beijerinckii 0.1000000 0.3627381
#> Acinetobacter_bouvetii -0.7181848 0.3627381
#> Acinetobacter_guillouiae -0.4472136 0.0000000
#> Acinetobacter_gyllenbergii 1.0000000 0.9176629
#> Acinetobacter_indicus 1.0000000 0.3627381
#> Acinetobacter_johnsonii -0.3590924 -0.5441072
#> Pseudomonas_fulva Pseudomonas_indica
#> Acinetobacter_beijerinckii -0.25 -0.3952847
#> Acinetobacter_bouvetii -0.25 0.3952847
#> Acinetobacter_guillouiae -0.25 0.7254763
#> Acinetobacter_gyllenbergii 1.00 -0.2500000
#> Acinetobacter_indicus -0.25 -0.2500000
#> Acinetobacter_johnsonii 0.00 -0.2500000
#> Pseudomonas_mendocina Pseudomonas_nitroreducens
#> Acinetobacter_beijerinckii 0.3535534 1.0000000
#> Acinetobacter_bouvetii 0.3535534 -0.3952847
#> Acinetobacter_guillouiae -0.6000000 -0.2500000
#> Acinetobacter_gyllenbergii 0.8720816 0.7071068
#> Acinetobacter_indicus 0.1118034 0.3535534
#> Acinetobacter_johnsonii -0.2236068 0.1813691
#> Pseudomonas_protegens Pseudomonas_putida
#> Acinetobacter_beijerinckii 0.1118034 0.2236068
#> Acinetobacter_bouvetii -0.3952847 -0.3952847
#> Acinetobacter_guillouiae 0.3952847 -0.6250000
#> Acinetobacter_gyllenbergii 0.5000000 0.3441236
#> Acinetobacter_indicus 0.3952847 -0.3952847
#> Acinetobacter_johnsonii 0.3952847 0.7905694
#> Pseudomonas_resinovorans Pseudomonas_syringae
#> Acinetobacter_beijerinckii -0.2500000 0.3952847
#> Acinetobacter_bouvetii -0.3535534 0.0000000
#> Acinetobacter_guillouiae -0.5441072 -0.5441072
#> Acinetobacter_gyllenbergii -0.2500000 -0.2500000
#> Acinetobacter_indicus -0.3952847 -0.2500000
#> Acinetobacter_johnsonii -0.3952847 -0.2500000
#> Staphylococcus_aureus Staphylococcus_capitis
#> Acinetobacter_beijerinckii 0.79056942 0.1250000
#> Acinetobacter_bouvetii 0.87500000 0.3952847
#> Acinetobacter_guillouiae -0.39528471 0.7826238
#> Acinetobacter_gyllenbergii -0.05735393 0.4472136
#> Acinetobacter_indicus 0.39528471 -0.3354102
#> Acinetobacter_johnsonii 0.50000000 -0.3952847
#> Staphylococcus_epidermidis
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii 0.7905694
#> Acinetobacter_guillouiae -0.3441236
#> Acinetobacter_gyllenbergii -0.3354102
#> Acinetobacter_indicus -0.1118034
#> Acinetobacter_johnsonii -0.3952847
#> Staphylococcus_haemolyticus
#> Acinetobacter_beijerinckii -0.9000000
#> Acinetobacter_bouvetii 0.1025978
#> Acinetobacter_guillouiae 0.0000000
#> Acinetobacter_gyllenbergii 0.3354102
#> Acinetobacter_indicus -0.3535534
#> Acinetobacter_johnsonii 0.9000000
#> Staphylococcus_lugdunensis
#> Acinetobacter_beijerinckii 0.0000000
#> Acinetobacter_bouvetii 0.7071068
#> Acinetobacter_guillouiae -0.5642881
#> Acinetobacter_gyllenbergii -0.7000000
#> Acinetobacter_indicus 0.4472136
#> Acinetobacter_johnsonii 0.4103913
#> Staphylococcus_pseudintermedius
#> Acinetobacter_beijerinckii 0.7071068
#> Acinetobacter_bouvetii -0.4000000
#> Acinetobacter_guillouiae 0.3535534
#> Acinetobacter_gyllenbergii 0.7071068
#> Acinetobacter_indicus -0.1118034
#> Acinetobacter_johnsonii -0.3952847
#> Staphylococcus_saprophyticus Staphylococcus_simiae
#> Acinetobacter_beijerinckii -0.2500000 0.1250000
#> Acinetobacter_bouvetii 1.0000000 -0.6250000
#> Acinetobacter_guillouiae 0.3952847 -0.3952847
#> Acinetobacter_gyllenbergii 0.7905694 -0.3952847
#> Acinetobacter_indicus -0.3952847 -0.3952847
#> Acinetobacter_johnsonii -0.2500000 -0.3952847
#> Streptococcus_anginosus Streptococcus_cristatus
#> Acinetobacter_beijerinckii 0.3535534 0.7905694
#> Acinetobacter_bouvetii 0.1813691 0.7905694
#> Acinetobacter_guillouiae 0.3952847 1.0000000
#> Acinetobacter_gyllenbergii -0.7071068 0.1250000
#> Acinetobacter_indicus -0.7071068 0.7905694
#> Acinetobacter_johnsonii 0.3627381 -0.3952847
#> Streptococcus_gallolyticus Streptococcus_mitis
#> Acinetobacter_beijerinckii -0.3952847 -0.3952847
#> Acinetobacter_bouvetii 0.3952847 -0.3952847
#> Acinetobacter_guillouiae 0.3952847 -0.5441072
#> Acinetobacter_gyllenbergii 0.7905694 -0.2500000
#> Acinetobacter_indicus -0.3952847 1.0000000
#> Acinetobacter_johnsonii 0.4472136 -0.2500000
#> Streptococcus_mutans Streptococcus_parasanguinis
#> Acinetobacter_beijerinckii 0.7254763 0.7905694
#> Acinetobacter_bouvetii 0.7254763 -0.1250000
#> Acinetobacter_guillouiae -0.4103913 -0.3952847
#> Acinetobacter_gyllenbergii 0.1052632 0.6708204
#> Acinetobacter_indicus -0.3441236 0.1118034
#> Acinetobacter_johnsonii 0.0000000 0.6308933
#> Streptococcus_pyogenes Streptococcus_sanguinis
#> Acinetobacter_beijerinckii -0.1538968 0.2051957
#> Acinetobacter_bouvetii -0.5441072 -0.5441072
#> Acinetobacter_guillouiae -0.5441072 -0.8603090
#> Acinetobacter_gyllenbergii 0.3441236 0.5000000
#> Acinetobacter_indicus -0.5441072 -0.5441072
#> Acinetobacter_johnsonii -0.5441072 0.7254763
#> Streptococcus_sobrinus Streptococcus_suis
#> Acinetobacter_beijerinckii -0.2500000 0.7905694
#> Acinetobacter_bouvetii 0.3535534 -0.5441072
#> Acinetobacter_guillouiae 0.7254763 0.7254763
#> Acinetobacter_gyllenbergii 1.0000000 1.0000000
#> Acinetobacter_indicus 0.3952847 1.0000000
#> Acinetobacter_johnsonii 0.7905694 1.0000000
#> Streptococcus_thermophilus Weissella_koreensis
#> Acinetobacter_beijerinckii -0.4472136 0.1250000
#> Acinetobacter_bouvetii 0.6882472 0.3952847
#> Acinetobacter_guillouiae -0.5441072 -0.2236068
#> Acinetobacter_gyllenbergii -0.8157895 -0.2236068
#> Acinetobacter_indicus 0.7254763 0.6708204
#> Acinetobacter_johnsonii 0.2294157 0.7905694
#> Weissella_oryzae Weissella_paramesenteroides
#> Acinetobacter_beijerinckii -0.3952847 -0.7071068
#> Acinetobacter_bouvetii 0.3952847 0.3627381
#> Acinetobacter_guillouiae -0.5161854 -0.2500000
#> Acinetobacter_gyllenbergii -0.2236068 0.7905694
#> Acinetobacter_indicus -0.4472136 -0.2500000
#> Acinetobacter_johnsonii -0.3952847 0.3535534
#>
#> , , S2
#>
#> Acinetobacter_beijerinckii Acinetobacter_bouvetii
#> Acinetobacter_beijerinckii 1.0000000 -0.2500000
#> Acinetobacter_bouvetii -0.2500000 0.3535534
#> Acinetobacter_guillouiae 0.7254763 -0.2500000
#> Acinetobacter_gyllenbergii -0.7071068 -0.2500000
#> Acinetobacter_indicus 0.7905694 -0.3952847
#> Acinetobacter_johnsonii -0.5441072 0.0000000
#> Acinetobacter_guillouiae Acinetobacter_gyllenbergii
#> Acinetobacter_beijerinckii -0.3535534 -0.1118034
#> Acinetobacter_bouvetii 0.3535534 -0.4472136
#> Acinetobacter_guillouiae 0.8944272 -0.7071068
#> Acinetobacter_gyllenbergii 0.1118034 0.7071068
#> Acinetobacter_indicus -0.3354102 0.7071068
#> Acinetobacter_johnsonii -0.3535534 0.3535534
#> Acinetobacter_indicus Acinetobacter_johnsonii
#> Acinetobacter_beijerinckii 0.1118034 0.7254763
#> Acinetobacter_bouvetii 0.4588315 0.7254763
#> Acinetobacter_guillouiae -0.6250000 0.3441236
#> Acinetobacter_gyllenbergii 0.1118034 0.8029551
#> Acinetobacter_indicus 0.1118034 0.7254763
#> Acinetobacter_johnsonii -0.8603090 0.0000000
#> Acinetobacter_parvus Acinetobacter_pittii
#> Acinetobacter_beijerinckii 1.0000000 0.3952847
#> Acinetobacter_bouvetii -0.2500000 0.7905694
#> Acinetobacter_guillouiae -0.2500000 -0.5441072
#> Acinetobacter_gyllenbergii -0.2500000 -0.2500000
#> Acinetobacter_indicus -0.2500000 -0.2500000
#> Acinetobacter_johnsonii 0.3535534 1.0000000
#> Acinetobacter_radioresistens Acinetobacter_towneri
#> Acinetobacter_beijerinckii -0.2500000 0.7071068
#> Acinetobacter_bouvetii -0.2500000 0.2236068
#> Acinetobacter_guillouiae 0.3535534 -0.7071068
#> Acinetobacter_gyllenbergii 0.0000000 0.8000000
#> Acinetobacter_indicus -0.3952847 -0.1000000
#> Acinetobacter_johnsonii -0.3952847 0.7181848
#> Acinetobacter_ursingii Aeromonas_hydrophila
#> Acinetobacter_beijerinckii 0.3535534 -0.3535534
#> Acinetobacter_bouvetii -0.2500000 1.0000000
#> Acinetobacter_guillouiae -0.2500000 0.3952847
#> Acinetobacter_gyllenbergii 0.7905694 -0.5441072
#> Acinetobacter_indicus -0.2500000 -0.2500000
#> Acinetobacter_johnsonii -0.2500000 -0.2500000
#> Aeromonas_salmonicida Alkalihalophilus_pseudofirmus
#> Acinetobacter_beijerinckii 0.3627381 -0.3952847
#> Acinetobacter_bouvetii -0.5441072 0.0000000
#> Acinetobacter_guillouiae -0.5441072 -0.2500000
#> Acinetobacter_gyllenbergii 0.7254763 -0.2500000
#> Acinetobacter_indicus -0.5441072 1.0000000
#> Acinetobacter_johnsonii 0.3627381 -0.2500000
#> Brucella_anthropi Brucella_melitensis
#> Acinetobacter_beijerinckii -0.2500000 -0.2500000
#> Acinetobacter_bouvetii -0.7071068 0.7905694
#> Acinetobacter_guillouiae -0.3535534 -0.7071068
#> Acinetobacter_gyllenbergii 0.0000000 0.3952847
#> Acinetobacter_indicus 0.3952847 -0.5441072
#> Acinetobacter_johnsonii -0.2500000 -0.2500000
#> Corynebacterium_accolens
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii 1.0000000
#> Acinetobacter_guillouiae 0.7905694
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus 0.0000000
#> Acinetobacter_johnsonii 0.8720816
#> Corynebacterium_ammoniagenes
#> Acinetobacter_beijerinckii 0.35355339
#> Acinetobacter_bouvetii -0.22360680
#> Acinetobacter_guillouiae -0.05129892
#> Acinetobacter_gyllenbergii 0.87208160
#> Acinetobacter_indicus 0.00000000
#> Acinetobacter_johnsonii 0.46169026
#> Corynebacterium_appendicis
#> Acinetobacter_beijerinckii -0.54410719
#> Acinetobacter_bouvetii 0.68824720
#> Acinetobacter_guillouiae -0.63157895
#> Acinetobacter_gyllenbergii 0.05129892
#> Acinetobacter_indicus -0.54410719
#> Acinetobacter_johnsonii 0.15389675
#> Corynebacterium_argentoratense
#> Acinetobacter_beijerinckii 1.00
#> Acinetobacter_bouvetii -0.25
#> Acinetobacter_guillouiae -0.25
#> Acinetobacter_gyllenbergii -0.25
#> Acinetobacter_indicus -0.25
#> Acinetobacter_johnsonii 1.00
#> Corynebacterium_aurimucosum Corynebacterium_callunae
#> Acinetobacter_beijerinckii -0.6708204 -0.2500000
#> Acinetobacter_bouvetii 0.4472136 0.0000000
#> Acinetobacter_guillouiae -0.3535534 0.0000000
#> Acinetobacter_gyllenbergii 0.3535534 0.7254763
#> Acinetobacter_indicus 0.7071068 -0.3952847
#> Acinetobacter_johnsonii -0.7071068 1.0000000
#> Corynebacterium_casei Corynebacterium_ciconiae
#> Acinetobacter_beijerinckii -0.5441072 -0.2500000
#> Acinetobacter_bouvetii 0.2294157 -0.2500000
#> Acinetobacter_guillouiae 0.6668859 0.3952847
#> Acinetobacter_gyllenbergii -0.5161854 -0.2500000
#> Acinetobacter_indicus -0.2631579 0.7071068
#> Acinetobacter_johnsonii 0.7254763 -0.5441072
#> Corynebacterium_deserti Corynebacterium_durum
#> Acinetobacter_beijerinckii -0.2500000 1.0000000
#> Acinetobacter_bouvetii -0.3952847 -0.3952847
#> Acinetobacter_guillouiae 0.3627381 0.7254763
#> Acinetobacter_gyllenbergii -0.5441072 -0.3535534
#> Acinetobacter_indicus -0.2500000 1.0000000
#> Acinetobacter_johnsonii -0.5441072 0.3535534
#> Corynebacterium_efficiens Corynebacterium_falsenii
#> Acinetobacter_beijerinckii 1.00 0.5000000
#> Acinetobacter_bouvetii -0.25 -0.7500000
#> Acinetobacter_guillouiae -0.25 -0.3952847
#> Acinetobacter_gyllenbergii -0.25 0.3952847
#> Acinetobacter_indicus -0.25 -0.3952847
#> Acinetobacter_johnsonii 1.00 0.7905694
#> Corynebacterium_freneyi Corynebacterium_genitalium
#> Acinetobacter_beijerinckii -0.3952847 -0.39528471
#> Acinetobacter_bouvetii -0.4472136 1.00000000
#> Acinetobacter_guillouiae 0.1118034 -0.44721360
#> Acinetobacter_gyllenbergii -0.3441236 0.12500000
#> Acinetobacter_indicus 0.1250000 -0.05735393
#> Acinetobacter_johnsonii -0.3952847 -0.39528471
#> Corynebacterium_glutamicum
#> Acinetobacter_beijerinckii 1.0000000
#> Acinetobacter_bouvetii -0.2500000
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus 0.3535534
#> Acinetobacter_johnsonii 0.0000000
#> Corynebacterium_glyciniphilum
#> Acinetobacter_beijerinckii 0.7254763
#> Acinetobacter_bouvetii -0.8029551
#> Acinetobacter_guillouiae 1.0000000
#> Acinetobacter_gyllenbergii 0.2894737
#> Acinetobacter_indicus -0.7254763
#> Acinetobacter_johnsonii -0.6315789
#> Corynebacterium_jeikeium Corynebacterium_lactis
#> Acinetobacter_beijerinckii 0.7254763 0.0000000
#> Acinetobacter_bouvetii -0.3441236 0.3627381
#> Acinetobacter_guillouiae 1.0000000 -0.5441072
#> Acinetobacter_gyllenbergii 0.3077935 -0.5441072
#> Acinetobacter_indicus 0.7254763 0.3627381
#> Acinetobacter_johnsonii -0.3077935 0.0000000
#> Corynebacterium_lipophiloflavum
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii 0.0000000
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii 1.0000000
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii -0.2500000
#> Corynebacterium_maris Corynebacterium_matruchotii
#> Acinetobacter_beijerinckii -0.5441072 -0.2500000
#> Acinetobacter_bouvetii 0.2051957 0.3952847
#> Acinetobacter_guillouiae 0.1025978 0.3535534
#> Acinetobacter_gyllenbergii -0.2368421 -0.3952847
#> Acinetobacter_indicus 0.9176629 0.7254763
#> Acinetobacter_johnsonii 0.0000000 -0.2500000
#> Corynebacterium_nuruki Corynebacterium_otitidis
#> Acinetobacter_beijerinckii -0.2500000 0.00000000
#> Acinetobacter_bouvetii -0.2500000 -0.89442719
#> Acinetobacter_guillouiae -0.3952847 0.61558701
#> Acinetobacter_gyllenbergii -0.2500000 -0.05129892
#> Acinetobacter_indicus -0.3535534 -0.70710678
#> Acinetobacter_johnsonii 0.3441236 -0.20519567
#> Corynebacterium_pseudodiphtheriticum
#> Acinetobacter_beijerinckii 0.7905694
#> Acinetobacter_bouvetii 0.1250000
#> Acinetobacter_guillouiae 0.6882472
#> Acinetobacter_gyllenbergii -0.1118034
#> Acinetobacter_indicus 0.7905694
#> Acinetobacter_johnsonii 0.1118034
#> Corynebacterium_pyruviciproducens
#> Acinetobacter_beijerinckii -0.25
#> Acinetobacter_bouvetii -0.25
#> Acinetobacter_guillouiae 1.00
#> Acinetobacter_gyllenbergii -0.25
#> Acinetobacter_indicus -0.25
#> Acinetobacter_johnsonii -0.25
#> Corynebacterium_sphenisci
#> Acinetobacter_beijerinckii 0.05735393
#> Acinetobacter_bouvetii -0.80295507
#> Acinetobacter_guillouiae -0.36273813
#> Acinetobacter_gyllenbergii 0.54410719
#> Acinetobacter_indicus 0.00000000
#> Acinetobacter_johnsonii 0.54410719
#> Corynebacterium_terpenotabidum
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii -0.7071068
#> Acinetobacter_guillouiae -0.3535534
#> Acinetobacter_gyllenbergii 0.0000000
#> Acinetobacter_indicus 0.3952847
#> Acinetobacter_johnsonii -0.2500000
#> Corynebacterium_timonense
#> Acinetobacter_beijerinckii -0.7071068
#> Acinetobacter_bouvetii 0.2236068
#> Acinetobacter_guillouiae 0.7000000
#> Acinetobacter_gyllenbergii -0.3354102
#> Acinetobacter_indicus -0.2051957
#> Acinetobacter_johnsonii 0.7071068
#> Corynebacterium_tuscaniense
#> Acinetobacter_beijerinckii 0.7905694
#> Acinetobacter_bouvetii 0.3952847
#> Acinetobacter_guillouiae 0.1250000
#> Acinetobacter_gyllenbergii -0.3952847
#> Acinetobacter_indicus 0.3354102
#> Acinetobacter_johnsonii -0.8029551
#> Corynebacterium_urealyticum
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii 0.3952847
#> Acinetobacter_guillouiae -0.1813691
#> Acinetobacter_gyllenbergii -0.5441072
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii 0.3627381
#> Corynebacterium_variabile Corynebacterium_xerosis
#> Acinetobacter_beijerinckii -0.2500000 -0.25
#> Acinetobacter_bouvetii 0.7905694 -0.25
#> Acinetobacter_guillouiae 0.0000000 -0.25
#> Acinetobacter_gyllenbergii 0.3535534 1.00
#> Acinetobacter_indicus -0.2500000 -0.25
#> Acinetobacter_johnsonii -0.3535534 -0.25
#> Cutibacterium_avidum Delftia_acidovorans
#> Acinetobacter_beijerinckii 0.7905694 0.0000000
#> Acinetobacter_bouvetii -0.7905694 0.5000000
#> Acinetobacter_guillouiae -0.2500000 0.1000000
#> Acinetobacter_gyllenbergii -0.2500000 0.4103913
#> Acinetobacter_indicus -0.2500000 -0.1118034
#> Acinetobacter_johnsonii 1.0000000 0.7071068
#> Dolosigranulum_pigrum Enterobacter_cloacae
#> Acinetobacter_beijerinckii -0.2500000 1.0000000
#> Acinetobacter_bouvetii 0.7905694 -0.2500000
#> Acinetobacter_guillouiae -0.7071068 -0.3952847
#> Acinetobacter_gyllenbergii 0.3952847 -0.2500000
#> Acinetobacter_indicus -0.5441072 0.3535534
#> Acinetobacter_johnsonii -0.2500000 0.0000000
#> Enterobacter_hormaechei Escherichia_coli
#> Acinetobacter_beijerinckii 0.72547625 -0.3535534
#> Acinetobacter_bouvetii -0.34412360 -0.1118034
#> Acinetobacter_guillouiae 0.28947368 0.3077935
#> Acinetobacter_gyllenbergii 1.00000000 1.0000000
#> Acinetobacter_indicus 0.00000000 -0.3535534
#> Acinetobacter_johnsonii -0.02631579 -0.6000000
#> Haemophilus_influenzae Haemophilus_sputorum
#> Acinetobacter_beijerinckii -0.3535534 0.7905694
#> Acinetobacter_bouvetii 0.0000000 -0.7905694
#> Acinetobacter_guillouiae 0.7071068 -0.2500000
#> Acinetobacter_gyllenbergii 0.3535534 -0.2500000
#> Acinetobacter_indicus 0.0000000 -0.2500000
#> Acinetobacter_johnsonii -0.3535534 1.0000000
#> Kocuria_rhizophila Listeria_floridensis
#> Acinetobacter_beijerinckii 0.3952847 -0.2500000
#> Acinetobacter_bouvetii -0.8944272 0.7905694
#> Acinetobacter_guillouiae -0.7826238 -0.7071068
#> Acinetobacter_gyllenbergii 0.2294157 0.3952847
#> Acinetobacter_indicus 0.1250000 -0.5441072
#> Acinetobacter_johnsonii -0.3952847 -0.2500000
#> Listeria_grayi Listeria_monocytogenes
#> Acinetobacter_beijerinckii 1.0000000 -0.3952847
#> Acinetobacter_bouvetii -0.2500000 0.1250000
#> Acinetobacter_guillouiae -0.3952847 -0.1147079
#> Acinetobacter_gyllenbergii -0.2500000 -0.5161854
#> Acinetobacter_indicus 0.3535534 0.3952847
#> Acinetobacter_johnsonii -0.5441072 -0.5161854
#> Moraxella_atlantae Moraxella_caprae
#> Acinetobacter_beijerinckii -0.2500000 0.0000000
#> Acinetobacter_bouvetii -0.3952847 0.2051957
#> Acinetobacter_guillouiae 0.3627381 0.7071068
#> Acinetobacter_gyllenbergii 0.7071068 0.7071068
#> Acinetobacter_indicus -0.2500000 -0.2236068
#> Acinetobacter_johnsonii -0.7071068 0.7826238
#> Moraxella_cuniculi Moraxella_porci
#> Acinetobacter_beijerinckii -0.3952847 0.1250000
#> Acinetobacter_bouvetii 0.0000000 0.3441236
#> Acinetobacter_guillouiae -0.2500000 -0.4472136
#> Acinetobacter_gyllenbergii -0.3952847 0.1250000
#> Acinetobacter_indicus 0.7905694 0.8029551
#> Acinetobacter_johnsonii 0.0000000 -0.3354102
#> Mycoplasma_genitalium Mycoplasma_testudinis
#> Acinetobacter_beijerinckii -0.6668859 -0.4124790
#> Acinetobacter_bouvetii -0.7071068 0.4325905
#> Acinetobacter_guillouiae -0.2500000 -0.1351845
#> Acinetobacter_gyllenbergii 0.3952847 -0.5590170
#> Acinetobacter_indicus 0.3627381 -0.5590170
#> Acinetobacter_johnsonii 1.0000000 -0.7378648
#> Noviherbaspirillum_massiliense Other
#> Acinetobacter_beijerinckii -0.4616903 -0.3000000
#> Acinetobacter_bouvetii -0.2236068 -0.7071068
#> Acinetobacter_guillouiae 0.9746794 -0.3535534
#> Acinetobacter_gyllenbergii -0.2000000 0.3000000
#> Acinetobacter_indicus 0.8944272 0.3535534
#> Acinetobacter_johnsonii 0.7826238 0.4472136
#> Paracoccus_aminophilus Paracoccus_denitrificans
#> Acinetobacter_beijerinckii -0.3952847 0.3535534
#> Acinetobacter_bouvetii 0.8249579 -0.2500000
#> Acinetobacter_guillouiae 0.1118034 -0.2500000
#> Acinetobacter_gyllenbergii -0.4472136 -0.2500000
#> Acinetobacter_indicus 0.6708204 -0.3952847
#> Acinetobacter_johnsonii 1.0000000 0.7905694
#> Pseudomonas_fulva Pseudomonas_indica
#> Acinetobacter_beijerinckii 0.2236068 -0.1118034
#> Acinetobacter_bouvetii 0.7000000 0.3354102
#> Acinetobacter_guillouiae 0.1118034 0.0000000
#> Acinetobacter_gyllenbergii -0.3535534 0.0000000
#> Acinetobacter_indicus -0.3535534 -0.3535534
#> Acinetobacter_johnsonii 0.6708204 -0.3535534
#> Pseudomonas_mendocina Pseudomonas_nitroreducens
#> Acinetobacter_beijerinckii -0.3952847 -0.3952847
#> Acinetobacter_bouvetii -0.2500000 0.3535534
#> Acinetobacter_guillouiae 0.3535534 -0.3952847
#> Acinetobacter_gyllenbergii -0.7071068 0.0000000
#> Acinetobacter_indicus -0.3952847 1.0000000
#> Acinetobacter_johnsonii 1.0000000 -0.5441072
#> Pseudomonas_protegens Pseudomonas_putida
#> Acinetobacter_beijerinckii 0.00000000 -0.2500000
#> Acinetobacter_bouvetii -0.10259784 -0.2500000
#> Acinetobacter_guillouiae 0.10259784 1.0000000
#> Acinetobacter_gyllenbergii 0.05407381 0.7254763
#> Acinetobacter_indicus 0.36273813 0.7905694
#> Acinetobacter_johnsonii 0.89473684 -0.2500000
#> Pseudomonas_resinovorans Pseudomonas_syringae
#> Acinetobacter_beijerinckii -0.3952847 0.0000000
#> Acinetobacter_bouvetii -0.3952847 0.1250000
#> Acinetobacter_guillouiae 0.8029551 -0.4472136
#> Acinetobacter_gyllenbergii 0.3952847 -0.3952847
#> Acinetobacter_indicus 0.3952847 -0.1250000
#> Acinetobacter_johnsonii 1.0000000 -0.1250000
#> Staphylococcus_aureus Staphylococcus_capitis
#> Acinetobacter_beijerinckii -0.02631579 -0.5441072
#> Acinetobacter_bouvetii -0.28676967 0.8720816
#> Acinetobacter_guillouiae -0.26315789 0.3535534
#> Acinetobacter_gyllenbergii 0.41039134 -0.2500000
#> Acinetobacter_indicus -0.34412360 -0.3952847
#> Acinetobacter_johnsonii 0.02631579 -0.1813691
#> Staphylococcus_epidermidis
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii 0.7905694
#> Acinetobacter_guillouiae -0.5441072
#> Acinetobacter_gyllenbergii -0.5441072
#> Acinetobacter_indicus 1.0000000
#> Acinetobacter_johnsonii 1.0000000
#> Staphylococcus_haemolyticus
#> Acinetobacter_beijerinckii 0.2236068
#> Acinetobacter_bouvetii 0.4616903
#> Acinetobacter_guillouiae 0.8944272
#> Acinetobacter_gyllenbergii 0.1025978
#> Acinetobacter_indicus -0.1000000
#> Acinetobacter_johnsonii 0.1118034
#> Staphylococcus_lugdunensis
#> Acinetobacter_beijerinckii -0.5441072
#> Acinetobacter_bouvetii 0.3535534
#> Acinetobacter_guillouiae 1.0000000
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus -0.7071068
#> Acinetobacter_johnsonii -0.2500000
#> Staphylococcus_pseudintermedius
#> Acinetobacter_beijerinckii 0.7254763
#> Acinetobacter_bouvetii -0.2500000
#> Acinetobacter_guillouiae 0.7453560
#> Acinetobacter_gyllenbergii -0.3535534
#> Acinetobacter_indicus -0.7071068
#> Acinetobacter_johnsonii 0.7071068
#> Staphylococcus_saprophyticus Staphylococcus_simiae
#> Acinetobacter_beijerinckii 0.3952847 0.5000000
#> Acinetobacter_bouvetii 0.4472136 0.1250000
#> Acinetobacter_guillouiae -0.3952847 -0.8944272
#> Acinetobacter_gyllenbergii 0.3952847 -0.6250000
#> Acinetobacter_indicus -0.3952847 -0.3952847
#> Acinetobacter_johnsonii 1.0000000 -0.3952847
#> Streptococcus_anginosus Streptococcus_cristatus
#> Acinetobacter_beijerinckii -0.3535534 0.1000000
#> Acinetobacter_bouvetii -0.2236068 -0.4472136
#> Acinetobacter_guillouiae 0.4472136 -0.7071068
#> Acinetobacter_gyllenbergii -0.3535534 0.3000000
#> Acinetobacter_indicus -0.3535534 0.1000000
#> Acinetobacter_johnsonii -0.7071068 -0.8944272
#> Streptococcus_gallolyticus Streptococcus_mitis
#> Acinetobacter_beijerinckii -0.3952847 -0.54410719
#> Acinetobacter_bouvetii -0.3952847 0.22941573
#> Acinetobacter_guillouiae 0.3535534 -0.35909242
#> Acinetobacter_gyllenbergii -0.3952847 -0.05129892
#> Acinetobacter_indicus 0.0000000 -0.10814761
#> Acinetobacter_johnsonii 1.0000000 0.00000000
#> Streptococcus_mutans Streptococcus_parasanguinis
#> Acinetobacter_beijerinckii -0.3952847 0.3952847
#> Acinetobacter_bouvetii -0.3952847 -0.2500000
#> Acinetobacter_guillouiae -0.3952847 -0.2500000
#> Acinetobacter_gyllenbergii 0.7905694 0.3627381
#> Acinetobacter_indicus 0.3441236 -0.2500000
#> Acinetobacter_johnsonii 0.5000000 -0.2500000
#> Streptococcus_pyogenes Streptococcus_sanguinis
#> Acinetobacter_beijerinckii -0.3952847 -0.39528471
#> Acinetobacter_bouvetii -0.3441236 -0.05735393
#> Acinetobacter_guillouiae 0.1250000 0.12500000
#> Acinetobacter_gyllenbergii -0.1118034 0.68824720
#> Acinetobacter_indicus 0.7905694 -0.22360680
#> Acinetobacter_johnsonii 1.0000000 -0.12500000
#> Streptococcus_sobrinus Streptococcus_suis
#> Acinetobacter_beijerinckii -0.2867697 0.72547625
#> Acinetobacter_bouvetii -0.5441072 0.80295507
#> Acinetobacter_guillouiae -0.1025978 -0.05735393
#> Acinetobacter_gyllenbergii 0.7826238 -0.39473684
#> Acinetobacter_indicus -0.3952847 0.89473684
#> Acinetobacter_johnsonii -0.6250000 -0.54410719
#> Streptococcus_thermophilus Weissella_koreensis
#> Acinetobacter_beijerinckii 0.4472136 0.87500000
#> Acinetobacter_bouvetii -0.8944272 -0.05735393
#> Acinetobacter_guillouiae 0.5642881 0.67082039
#> Acinetobacter_gyllenbergii 0.1118034 -0.39528471
#> Acinetobacter_indicus -0.1538968 -0.39528471
#> Acinetobacter_johnsonii 1.0000000 0.11180340
#> Weissella_oryzae Weissella_paramesenteroides
#> Acinetobacter_beijerinckii 0.1118034 -0.3952847
#> Acinetobacter_bouvetii 0.6155870 -0.3952847
#> Acinetobacter_guillouiae 0.7071068 -0.8944272
#> Acinetobacter_gyllenbergii 0.0000000 0.7905694
#> Acinetobacter_indicus -0.4000000 -0.3952847
#> Acinetobacter_johnsonii 0.1000000 0.7905694
#>
#> , , S3
#>
#> Acinetobacter_beijerinckii Acinetobacter_bouvetii
#> Acinetobacter_beijerinckii 0.0000000 -0.7071068
#> Acinetobacter_bouvetii -0.3952847 -0.2500000
#> Acinetobacter_guillouiae -0.3952847 -0.3952847
#> Acinetobacter_gyllenbergii 0.0000000 -0.3952847
#> Acinetobacter_indicus 0.7905694 -0.2500000
#> Acinetobacter_johnsonii 1.0000000 -0.2500000
#> Acinetobacter_guillouiae Acinetobacter_gyllenbergii
#> Acinetobacter_beijerinckii 0.4000000 -0.3535534
#> Acinetobacter_bouvetii 0.0000000 -0.2236068
#> Acinetobacter_guillouiae 0.3354102 -0.4472136
#> Acinetobacter_gyllenbergii 0.0000000 0.1000000
#> Acinetobacter_indicus -0.5000000 -0.4472136
#> Acinetobacter_johnsonii 0.9000000 0.1000000
#> Acinetobacter_indicus Acinetobacter_johnsonii
#> Acinetobacter_beijerinckii 0.1863390 -0.25
#> Acinetobacter_bouvetii 0.1863390 1.00
#> Acinetobacter_guillouiae 0.8249579 1.00
#> Acinetobacter_gyllenbergii 0.2635231 1.00
#> Acinetobacter_indicus 0.5797509 -0.25
#> Acinetobacter_johnsonii 1.0000000 0.00
#> Acinetobacter_parvus Acinetobacter_pittii
#> Acinetobacter_beijerinckii -0.1118034 0.5642881
#> Acinetobacter_bouvetii -0.6250000 -0.5441072
#> Acinetobacter_guillouiae 0.3952847 0.7631579
#> Acinetobacter_gyllenbergii -0.3952847 -0.3441236
#> Acinetobacter_indicus -0.8603090 -0.3590924
#> Acinetobacter_johnsonii -0.3952847 -0.5441072
#> Acinetobacter_radioresistens Acinetobacter_towneri
#> Acinetobacter_beijerinckii -0.1054093 0.4588315
#> Acinetobacter_bouvetii -0.7071068 0.8750000
#> Acinetobacter_guillouiae -0.1538968 -0.3952847
#> Acinetobacter_gyllenbergii 0.3354102 0.7826238
#> Acinetobacter_indicus 0.1025978 -0.8207827
#> Acinetobacter_johnsonii 1.0000000 0.3627381
#> Acinetobacter_ursingii Aeromonas_hydrophila
#> Acinetobacter_beijerinckii 0.7071068 -0.2500000
#> Acinetobacter_bouvetii 0.7071068 -0.3952847
#> Acinetobacter_guillouiae 0.4472136 -0.3952847
#> Acinetobacter_gyllenbergii -0.2236068 -0.5441072
#> Acinetobacter_indicus 0.1025978 -0.3952847
#> Acinetobacter_johnsonii 0.4616903 -0.5441072
#> Aeromonas_salmonicida Alkalihalophilus_pseudofirmus
#> Acinetobacter_beijerinckii 0.0000000 -0.2500000
#> Acinetobacter_bouvetii -0.3952847 -0.3952847
#> Acinetobacter_guillouiae 0.3627381 -0.7254763
#> Acinetobacter_gyllenbergii -0.3535534 -0.2500000
#> Acinetobacter_indicus -0.2500000 0.1863390
#> Acinetobacter_johnsonii 1.0000000 0.7071068
#> Brucella_anthropi Brucella_melitensis
#> Acinetobacter_beijerinckii -0.3441236 -0.05735393
#> Acinetobacter_bouvetii 0.3952847 0.11180340
#> Acinetobacter_guillouiae 0.3952847 0.12500000
#> Acinetobacter_gyllenbergii 0.1118034 -0.12500000
#> Acinetobacter_indicus -0.3952847 -0.11180340
#> Acinetobacter_johnsonii 0.3952847 -0.62500000
#> Corynebacterium_accolens
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii 0.3535534
#> Acinetobacter_guillouiae 1.0000000
#> Acinetobacter_gyllenbergii -0.3952847
#> Acinetobacter_indicus 0.3952847
#> Acinetobacter_johnsonii 1.0000000
#> Corynebacterium_ammoniagenes
#> Acinetobacter_beijerinckii 0.3535534
#> Acinetobacter_bouvetii 0.0000000
#> Acinetobacter_guillouiae -0.7071068
#> Acinetobacter_gyllenbergii -0.3952847
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii 0.7071068
#> Corynebacterium_appendicis
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii -0.2500000
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii -0.3952847
#> Acinetobacter_indicus -0.7071068
#> Acinetobacter_johnsonii -0.3952847
#> Corynebacterium_argentoratense
#> Acinetobacter_beijerinckii 0.3952847
#> Acinetobacter_bouvetii -0.2500000
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii 0.7905694
#> Acinetobacter_indicus -0.3535534
#> Acinetobacter_johnsonii 0.3535534
#> Corynebacterium_aurimucosum Corynebacterium_callunae
#> Acinetobacter_beijerinckii 1.00 -0.2236068
#> Acinetobacter_bouvetii 1.00 -0.2236068
#> Acinetobacter_guillouiae -0.25 1.0000000
#> Acinetobacter_gyllenbergii -0.25 -0.3952847
#> Acinetobacter_indicus -0.25 -0.3952847
#> Acinetobacter_johnsonii 1.00 0.9176629
#> Corynebacterium_casei Corynebacterium_ciconiae
#> Acinetobacter_beijerinckii -0.3952847 0.10000000
#> Acinetobacter_bouvetii 0.0000000 -0.26352314
#> Acinetobacter_guillouiae 1.0000000 0.35355339
#> Acinetobacter_gyllenbergii -0.5441072 0.35909242
#> Acinetobacter_indicus 0.3952847 -0.33541020
#> Acinetobacter_johnsonii 0.7071068 0.05129892
#> Corynebacterium_deserti Corynebacterium_durum
#> Acinetobacter_beijerinckii 0.7826238 0.2236068
#> Acinetobacter_bouvetii -0.1250000 -0.3952847
#> Acinetobacter_guillouiae -0.6250000 -0.4472136
#> Acinetobacter_gyllenbergii 0.8944272 -0.3952847
#> Acinetobacter_indicus 0.6708204 0.7905694
#> Acinetobacter_johnsonii 0.2236068 0.7905694
#> Corynebacterium_efficiens Corynebacterium_falsenii
#> Acinetobacter_beijerinckii 0.7071068 -0.3441236
#> Acinetobacter_bouvetii 0.1000000 0.3952847
#> Acinetobacter_guillouiae -0.3077935 -0.3952847
#> Acinetobacter_gyllenbergii 0.3535534 -0.3952847
#> Acinetobacter_indicus 0.3535534 -0.6250000
#> Acinetobacter_johnsonii 0.7071068 0.0000000
#> Corynebacterium_freneyi Corynebacterium_genitalium
#> Acinetobacter_beijerinckii 0.7071068 0.1000000
#> Acinetobacter_bouvetii 0.7071068 0.3000000
#> Acinetobacter_guillouiae 0.7071068 1.0000000
#> Acinetobacter_gyllenbergii -0.3000000 0.7071068
#> Acinetobacter_indicus 0.9746794 0.6000000
#> Acinetobacter_johnsonii -0.9746794 -0.8000000
#> Corynebacterium_glutamicum
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii 1.0000000
#> Acinetobacter_guillouiae 1.0000000
#> Acinetobacter_gyllenbergii 0.7905694
#> Acinetobacter_indicus 0.7905694
#> Acinetobacter_johnsonii 0.3627381
#> Corynebacterium_glyciniphilum
#> Acinetobacter_beijerinckii 0.3535534
#> Acinetobacter_bouvetii 0.3535534
#> Acinetobacter_guillouiae -0.3535534
#> Acinetobacter_gyllenbergii 0.3535534
#> Acinetobacter_indicus 0.3535534
#> Acinetobacter_johnsonii 0.1118034
#> Corynebacterium_jeikeium Corynebacterium_lactis
#> Acinetobacter_beijerinckii -0.2500000 -0.3535534
#> Acinetobacter_bouvetii 0.3952847 0.7254763
#> Acinetobacter_guillouiae -0.4082483 -0.5441072
#> Acinetobacter_gyllenbergii 0.3952847 1.0000000
#> Acinetobacter_indicus 0.0000000 0.0000000
#> Acinetobacter_johnsonii 0.1863390 0.7071068
#> Corynebacterium_lipophiloflavum
#> Acinetobacter_beijerinckii 1.0000000
#> Acinetobacter_bouvetii 0.3535534
#> Acinetobacter_guillouiae -0.3535534
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus 1.0000000
#> Acinetobacter_johnsonii 0.7254763
#> Corynebacterium_maris Corynebacterium_matruchotii
#> Acinetobacter_beijerinckii 0.6882472 -0.2500000
#> Acinetobacter_bouvetii 0.6882472 -0.2500000
#> Acinetobacter_guillouiae 0.8947368 0.3952847
#> Acinetobacter_gyllenbergii 1.0000000 -0.3952847
#> Acinetobacter_indicus 0.9746794 0.7254763
#> Acinetobacter_johnsonii -0.9746794 0.7905694
#> Corynebacterium_nuruki Corynebacterium_otitidis
#> Acinetobacter_beijerinckii 0.4588315 -0.2500000
#> Acinetobacter_bouvetii 0.2368421 -0.5441072
#> Acinetobacter_guillouiae -0.4596274 0.0000000
#> Acinetobacter_gyllenbergii -0.2867697 -0.3535534
#> Acinetobacter_indicus -0.5441072 -0.2500000
#> Acinetobacter_johnsonii -0.2631579 -0.2500000
#> Corynebacterium_pseudodiphtheriticum
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii 1.0000000
#> Acinetobacter_guillouiae 0.7254763
#> Acinetobacter_gyllenbergii 1.0000000
#> Acinetobacter_indicus 0.7254763
#> Acinetobacter_johnsonii -0.2500000
#> Corynebacterium_pyruviciproducens
#> Acinetobacter_beijerinckii 0.3441236
#> Acinetobacter_bouvetii 0.4472136
#> Acinetobacter_guillouiae -0.4472136
#> Acinetobacter_gyllenbergii 0.5000000
#> Acinetobacter_indicus 0.8944272
#> Acinetobacter_johnsonii 0.5000000
#> Corynebacterium_sphenisci
#> Acinetobacter_beijerinckii 0.3227486
#> Acinetobacter_bouvetii 0.2294157
#> Acinetobacter_guillouiae -0.1250000
#> Acinetobacter_gyllenbergii -0.6250000
#> Acinetobacter_indicus 0.4472136
#> Acinetobacter_johnsonii 1.0000000
#> Corynebacterium_terpenotabidum
#> Acinetobacter_beijerinckii 0.8603090
#> Acinetobacter_bouvetii 0.5441072
#> Acinetobacter_guillouiae 0.2368421
#> Acinetobacter_gyllenbergii 0.5441072
#> Acinetobacter_indicus 0.4616903
#> Acinetobacter_johnsonii 0.5441072
#> Corynebacterium_timonense
#> Acinetobacter_beijerinckii 0.1054093
#> Acinetobacter_bouvetii 0.7453560
#> Acinetobacter_guillouiae -0.5590170
#> Acinetobacter_gyllenbergii 0.3162278
#> Acinetobacter_indicus 0.1863390
#> Acinetobacter_johnsonii 0.5270463
#> Corynebacterium_tuscaniense
#> Acinetobacter_beijerinckii 1.0000000
#> Acinetobacter_bouvetii 0.7254763
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii 1.0000000
#> Acinetobacter_indicus -0.5441072
#> Acinetobacter_johnsonii -0.2500000
#> Corynebacterium_urealyticum
#> Acinetobacter_beijerinckii 0.6882472
#> Acinetobacter_bouvetii 0.8207827
#> Acinetobacter_guillouiae 0.3441236
#> Acinetobacter_gyllenbergii 0.4588315
#> Acinetobacter_indicus 0.7254763
#> Acinetobacter_johnsonii 0.7254763
#> Corynebacterium_variabile Corynebacterium_xerosis
#> Acinetobacter_beijerinckii 0.2236068 -0.2500000
#> Acinetobacter_bouvetii 0.6000000 -0.3535534
#> Acinetobacter_guillouiae 0.3354102 1.0000000
#> Acinetobacter_gyllenbergii -0.1118034 -0.3535534
#> Acinetobacter_indicus 0.3000000 -0.2500000
#> Acinetobacter_johnsonii 0.9000000 -0.2500000
#> Cutibacterium_avidum Delftia_acidovorans
#> Acinetobacter_beijerinckii -0.6000000 1.0000000
#> Acinetobacter_bouvetii 0.7071068 -0.5441072
#> Acinetobacter_guillouiae -0.1000000 -0.2500000
#> Acinetobacter_gyllenbergii -0.5642881 -0.2500000
#> Acinetobacter_indicus 0.0000000 1.0000000
#> Acinetobacter_johnsonii 0.0000000 0.7905694
#> Dolosigranulum_pigrum Enterobacter_cloacae
#> Acinetobacter_beijerinckii 0.3952847 -0.1250000
#> Acinetobacter_bouvetii 1.0000000 0.6708204
#> Acinetobacter_guillouiae 1.0000000 0.4472136
#> Acinetobacter_gyllenbergii 1.0000000 0.4472136
#> Acinetobacter_indicus -0.3535534 0.7905694
#> Acinetobacter_johnsonii 0.7254763 -0.1118034
#> Enterobacter_hormaechei Escherichia_coli
#> Acinetobacter_beijerinckii -0.6668859 1.0000000
#> Acinetobacter_bouvetii -0.5441072 0.7254763
#> Acinetobacter_guillouiae 0.3627381 0.7254763
#> Acinetobacter_gyllenbergii 0.3627381 -0.5441072
#> Acinetobacter_indicus 0.3441236 0.7254763
#> Acinetobacter_johnsonii 0.3441236 0.7254763
#> Haemophilus_influenzae Haemophilus_sputorum
#> Acinetobacter_beijerinckii 0.3535534 0.7905694
#> Acinetobacter_bouvetii -0.7071068 -0.3354102
#> Acinetobacter_guillouiae -0.4472136 0.6882472
#> Acinetobacter_gyllenbergii -0.5773503 -0.5161854
#> Acinetobacter_indicus 0.8944272 0.7905694
#> Acinetobacter_johnsonii -0.6668859 -0.3441236
#> Kocuria_rhizophila Listeria_floridensis
#> Acinetobacter_beijerinckii 0.6708204 0.3952847
#> Acinetobacter_bouvetii 0.7905694 0.8750000
#> Acinetobacter_guillouiae 0.7826238 0.8750000
#> Acinetobacter_gyllenbergii -0.1118034 0.2294157
#> Acinetobacter_indicus -0.3952847 0.4588315
#> Acinetobacter_johnsonii 0.7905694 0.4472136
#> Listeria_grayi Listeria_monocytogenes
#> Acinetobacter_beijerinckii -0.2500000 0.6123724
#> Acinetobacter_bouvetii 1.0000000 -0.3952847
#> Acinetobacter_guillouiae 1.0000000 0.5441072
#> Acinetobacter_gyllenbergii -0.3952847 0.7453560
#> Acinetobacter_indicus 0.7905694 0.7905694
#> Acinetobacter_johnsonii 0.7254763 1.0000000
#> Moraxella_atlantae Moraxella_caprae
#> Acinetobacter_beijerinckii 0.2051957 -0.1538968
#> Acinetobacter_bouvetii -0.3535534 -0.5441072
#> Acinetobacter_guillouiae -0.6155870 -0.5441072
#> Acinetobacter_gyllenbergii 0.1000000 -0.2894737
#> Acinetobacter_indicus -0.6000000 -0.5441072
#> Acinetobacter_johnsonii -0.3535534 -0.2894737
#> Moraxella_cuniculi Moraxella_porci
#> Acinetobacter_beijerinckii 0.3627381 0.0000000
#> Acinetobacter_bouvetii 0.7254763 0.2294157
#> Acinetobacter_guillouiae 0.7071068 0.8207827
#> Acinetobacter_gyllenbergii -0.7071068 0.8944272
#> Acinetobacter_indicus 0.7905694 0.6708204
#> Acinetobacter_johnsonii 0.7071068 0.8000000
#> Mycoplasma_genitalium Mycoplasma_testudinis
#> Acinetobacter_beijerinckii 0.10540926 0.7071068
#> Acinetobacter_bouvetii 0.89442719 0.7071068
#> Acinetobacter_guillouiae 0.70710678 1.0000000
#> Acinetobacter_gyllenbergii 0.05129892 -0.2500000
#> Acinetobacter_indicus 0.70710678 0.7071068
#> Acinetobacter_johnsonii 0.50000000 -0.2500000
#> Noviherbaspirillum_massiliense Other
#> Acinetobacter_beijerinckii 0.9746794 0.3535534
#> Acinetobacter_bouvetii 0.7071068 -0.3952847
#> Acinetobacter_guillouiae 0.9746794 0.3535534
#> Acinetobacter_gyllenbergii -0.3535534 -0.3952847
#> Acinetobacter_indicus 0.7071068 -0.3952847
#> Acinetobacter_johnsonii -0.6155870 -0.2500000
#> Paracoccus_aminophilus Paracoccus_denitrificans
#> Acinetobacter_beijerinckii 0.3441236 0.7254763
#> Acinetobacter_bouvetii 0.6882472 1.0000000
#> Acinetobacter_guillouiae -0.3077935 0.7071068
#> Acinetobacter_gyllenbergii -0.8603090 -0.2500000
#> Acinetobacter_indicus -0.5161854 0.0000000
#> Acinetobacter_johnsonii 0.4616903 -0.2500000
#> Pseudomonas_fulva Pseudomonas_indica
#> Acinetobacter_beijerinckii -0.2500000 -0.2500000
#> Acinetobacter_bouvetii 0.7071068 1.0000000
#> Acinetobacter_guillouiae -0.2500000 -0.5441072
#> Acinetobacter_gyllenbergii 0.7071068 -0.2500000
#> Acinetobacter_indicus 0.7254763 -0.2500000
#> Acinetobacter_johnsonii 1.0000000 1.0000000
#> Pseudomonas_mendocina Pseudomonas_nitroreducens
#> Acinetobacter_beijerinckii 0.7905694 -0.1250000
#> Acinetobacter_bouvetii 0.3952847 -0.6250000
#> Acinetobacter_guillouiae 1.0000000 0.8944272
#> Acinetobacter_gyllenbergii 1.0000000 0.6708204
#> Acinetobacter_indicus 1.0000000 0.2236068
#> Acinetobacter_johnsonii -0.3535534 0.7905694
#> Pseudomonas_protegens Pseudomonas_putida
#> Acinetobacter_beijerinckii -0.8000000 0.67082039
#> Acinetobacter_bouvetii -0.3535534 -0.05735393
#> Acinetobacter_guillouiae 0.7071068 -0.11180340
#> Acinetobacter_gyllenbergii 0.3077935 -0.35355339
#> Acinetobacter_indicus 0.0000000 -0.39528471
#> Acinetobacter_johnsonii 0.9746794 1.00000000
#> Pseudomonas_resinovorans Pseudomonas_syringae
#> Acinetobacter_beijerinckii -0.5161854 1.0000000
#> Acinetobacter_bouvetii -0.5441072 1.0000000
#> Acinetobacter_guillouiae 0.6488857 -0.3952847
#> Acinetobacter_gyllenbergii -0.5441072 -0.2500000
#> Acinetobacter_indicus 0.5642881 0.0000000
#> Acinetobacter_johnsonii 0.3627381 -0.3627381
#> Staphylococcus_aureus Staphylococcus_capitis
#> Acinetobacter_beijerinckii -0.3952847 -0.1118034
#> Acinetobacter_bouvetii -0.2500000 0.6000000
#> Acinetobacter_guillouiae -0.3535534 -0.3535534
#> Acinetobacter_gyllenbergii -0.2500000 0.2051957
#> Acinetobacter_indicus 0.7905694 0.7071068
#> Acinetobacter_johnsonii 1.0000000 0.7071068
#> Staphylococcus_epidermidis
#> Acinetobacter_beijerinckii 0.7905694
#> Acinetobacter_bouvetii -0.6250000
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii 0.3535534
#> Acinetobacter_indicus -0.1250000
#> Acinetobacter_johnsonii -0.3952847
#> Staphylococcus_haemolyticus
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii 0.3535534
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii 0.7071068
#> Acinetobacter_indicus -0.3952847
#> Acinetobacter_johnsonii -0.7071068
#> Staphylococcus_lugdunensis
#> Acinetobacter_beijerinckii 0.0000000
#> Acinetobacter_bouvetii -0.1118034
#> Acinetobacter_guillouiae 0.1118034
#> Acinetobacter_gyllenbergii 0.7071068
#> Acinetobacter_indicus 0.3535534
#> Acinetobacter_johnsonii -0.4472136
#> Staphylococcus_pseudintermedius
#> Acinetobacter_beijerinckii -0.1813691
#> Acinetobacter_bouvetii -0.3952847
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus -0.3952847
#> Acinetobacter_johnsonii 0.3535534
#> Staphylococcus_saprophyticus Staphylococcus_simiae
#> Acinetobacter_beijerinckii -0.2500000 0.0000000
#> Acinetobacter_bouvetii 0.3535534 0.0000000
#> Acinetobacter_guillouiae 1.0000000 -0.8720816
#> Acinetobacter_gyllenbergii 0.0000000 0.4588315
#> Acinetobacter_indicus 1.0000000 -0.3947368
#> Acinetobacter_johnsonii -0.3952847 -0.5161854
#> Streptococcus_anginosus Streptococcus_cristatus
#> Acinetobacter_beijerinckii 0.5000000 0.3952847
#> Acinetobacter_bouvetii 0.7905694 0.1250000
#> Acinetobacter_guillouiae -0.2236068 0.2236068
#> Acinetobacter_gyllenbergii -0.1118034 0.3441236
#> Acinetobacter_indicus 0.7905694 -0.3952847
#> Acinetobacter_johnsonii -0.7826238 -0.3952847
#> Streptococcus_gallolyticus Streptococcus_mitis
#> Acinetobacter_beijerinckii -0.3952847 0.3952847
#> Acinetobacter_bouvetii -0.2500000 0.2294157
#> Acinetobacter_guillouiae -0.7071068 -0.7826238
#> Acinetobacter_gyllenbergii -0.3627381 -0.3952847
#> Acinetobacter_indicus 0.7905694 -0.3952847
#> Acinetobacter_johnsonii 1.0000000 -0.6250000
#> Streptococcus_mutans Streptococcus_parasanguinis
#> Acinetobacter_beijerinckii 0.2946278 0.2236068
#> Acinetobacter_bouvetii -0.5590170 -0.3952847
#> Acinetobacter_guillouiae -0.6488857 -0.3952847
#> Acinetobacter_gyllenbergii 0.1863390 -0.3441236
#> Acinetobacter_indicus -0.4124790 -0.3952847
#> Acinetobacter_johnsonii 0.1863390 -0.1147079
#> Streptococcus_pyogenes Streptococcus_sanguinis
#> Acinetobacter_beijerinckii 0.7071068 -0.3952847
#> Acinetobacter_bouvetii 0.1813691 -0.2500000
#> Acinetobacter_guillouiae -0.3535534 0.1863390
#> Acinetobacter_gyllenbergii -0.6000000 -0.2500000
#> Acinetobacter_indicus -0.8944272 0.3535534
#> Acinetobacter_johnsonii 0.7071068 -0.2500000
#> Streptococcus_sobrinus Streptococcus_suis
#> Acinetobacter_beijerinckii 0.7905694 -0.41247896
#> Acinetobacter_bouvetii 0.7905694 -0.55901699
#> Acinetobacter_guillouiae 0.1250000 0.63245553
#> Acinetobacter_gyllenbergii -0.3952847 0.18633900
#> Acinetobacter_indicus -0.2236068 -0.05892557
#> Acinetobacter_johnsonii 0.1147079 -0.55901699
#> Streptococcus_thermophilus Weissella_koreensis
#> Acinetobacter_beijerinckii -0.3952847 -0.2500000
#> Acinetobacter_bouvetii 0.7071068 -0.3952847
#> Acinetobacter_guillouiae -0.2500000 -0.2500000
#> Acinetobacter_gyllenbergii 0.0000000 -0.5590170
#> Acinetobacter_indicus -0.2500000 -0.3952847
#> Acinetobacter_johnsonii -0.2500000 -0.2500000
#> Weissella_oryzae Weissella_paramesenteroides
#> Acinetobacter_beijerinckii -0.3952847 -0.2500000
#> Acinetobacter_bouvetii 0.3535534 0.3952847
#> Acinetobacter_guillouiae -0.3952847 -0.3952847
#> Acinetobacter_gyllenbergii 0.7071068 -0.2500000
#> Acinetobacter_indicus -0.3952847 -0.2500000
#> Acinetobacter_johnsonii -0.7071068 0.3952847
#>
#> , , S4
#>
#> Acinetobacter_beijerinckii Acinetobacter_bouvetii
#> Acinetobacter_beijerinckii 0.02631579 -0.2500000
#> Acinetobacter_bouvetii -0.45883147 0.7071068
#> Acinetobacter_guillouiae -0.18136906 -0.2500000
#> Acinetobacter_gyllenbergii -0.18136906 -0.5441072
#> Acinetobacter_indicus -0.28676967 -0.2500000
#> Acinetobacter_johnsonii -0.05129892 -0.3952847
#> Acinetobacter_guillouiae Acinetobacter_gyllenbergii
#> Acinetobacter_beijerinckii -0.2500000 -0.4472136
#> Acinetobacter_bouvetii -0.2500000 0.0000000
#> Acinetobacter_guillouiae -0.3535534 -0.6000000
#> Acinetobacter_gyllenbergii 0.3952847 -0.3000000
#> Acinetobacter_indicus -0.1813691 0.0000000
#> Acinetobacter_johnsonii -0.3952847 0.0000000
#> Acinetobacter_indicus Acinetobacter_johnsonii
#> Acinetobacter_beijerinckii 0.0000000 -0.3952847
#> Acinetobacter_bouvetii -0.2867697 -0.2500000
#> Acinetobacter_guillouiae -0.2051957 0.0000000
#> Acinetobacter_gyllenbergii 1.0000000 0.1813691
#> Acinetobacter_indicus -0.5441072 -0.3952847
#> Acinetobacter_johnsonii -0.5441072 -0.2500000
#> Acinetobacter_parvus Acinetobacter_pittii
#> Acinetobacter_beijerinckii -0.70710678 0.2294157
#> Acinetobacter_bouvetii -0.05129892 -0.1813691
#> Acinetobacter_guillouiae 0.80000000 0.1578947
#> Acinetobacter_gyllenbergii 0.70710678 -0.7254763
#> Acinetobacter_indicus -0.35355339 -0.1147079
#> Acinetobacter_johnsonii 0.89442719 -0.7254763
#> Acinetobacter_radioresistens Acinetobacter_towneri
#> Acinetobacter_beijerinckii 0.3354102 -0.7071068
#> Acinetobacter_bouvetii -0.3952847 0.1813691
#> Acinetobacter_guillouiae -0.3952847 0.0000000
#> Acinetobacter_gyllenbergii -0.5161854 -0.3535534
#> Acinetobacter_indicus -0.3952847 -0.3952847
#> Acinetobacter_johnsonii -0.4588315 1.0000000
#> Acinetobacter_ursingii Aeromonas_hydrophila
#> Acinetobacter_beijerinckii 0.1250000 -0.70710678
#> Acinetobacter_bouvetii 0.3952847 -0.70710678
#> Acinetobacter_guillouiae -0.1767767 0.33541020
#> Acinetobacter_gyllenbergii -0.3952847 -0.35355339
#> Acinetobacter_indicus 0.4472136 0.30000000
#> Acinetobacter_johnsonii 0.7905694 -0.05129892
#> Aeromonas_salmonicida Alkalihalophilus_pseudofirmus
#> Acinetobacter_beijerinckii -0.1118034 1.0000000
#> Acinetobacter_bouvetii 0.3535534 -0.1118034
#> Acinetobacter_guillouiae -0.6000000 0.7905694
#> Acinetobacter_gyllenbergii -0.7071068 -0.8603090
#> Acinetobacter_indicus 0.4472136 -0.3952847
#> Acinetobacter_johnsonii 0.0000000 -0.3952847
#> Brucella_anthropi Brucella_melitensis
#> Acinetobacter_beijerinckii -0.2500000 -0.05735393
#> Acinetobacter_bouvetii -0.3952847 -0.46169026
#> Acinetobacter_guillouiae -0.2500000 0.68824720
#> Acinetobacter_gyllenbergii -0.5590170 0.66688593
#> Acinetobacter_indicus 0.3952847 -0.86030900
#> Acinetobacter_johnsonii -0.2500000 -0.20519567
#> Corynebacterium_accolens
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii 0.3952847
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii 0.3952847
#> Corynebacterium_ammoniagenes
#> Acinetobacter_beijerinckii 0.2867697
#> Acinetobacter_bouvetii -0.1250000
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii -0.3952847
#> Acinetobacter_indicus -0.6250000
#> Acinetobacter_johnsonii 0.3354102
#> Corynebacterium_appendicis
#> Acinetobacter_beijerinckii -0.3535534
#> Acinetobacter_bouvetii 0.5000000
#> Acinetobacter_guillouiae 0.7071068
#> Acinetobacter_gyllenbergii -0.4103913
#> Acinetobacter_indicus 0.7071068
#> Acinetobacter_johnsonii -0.3354102
#> Corynebacterium_argentoratense
#> Acinetobacter_beijerinckii 0.18136906
#> Acinetobacter_bouvetii 0.18136906
#> Acinetobacter_guillouiae -0.05129892
#> Acinetobacter_gyllenbergii 0.28676967
#> Acinetobacter_indicus -0.02631579
#> Acinetobacter_johnsonii -0.57353933
#> Corynebacterium_aurimucosum Corynebacterium_callunae
#> Acinetobacter_beijerinckii -0.3952847 -0.2236068
#> Acinetobacter_bouvetii 1.0000000 0.8750000
#> Acinetobacter_guillouiae -0.2294157 0.7905694
#> Acinetobacter_gyllenbergii -0.4472136 0.8029551
#> Acinetobacter_indicus 0.0000000 -0.3952847
#> Acinetobacter_johnsonii 0.7905694 0.1250000
#> Corynebacterium_casei Corynebacterium_ciconiae
#> Acinetobacter_beijerinckii 0.3354102 1.0000000
#> Acinetobacter_bouvetii 0.1250000 -0.3952847
#> Acinetobacter_guillouiae 0.3354102 0.1813691
#> Acinetobacter_gyllenbergii 0.3952847 0.0000000
#> Acinetobacter_indicus -0.3952847 0.7254763
#> Acinetobacter_johnsonii 0.1250000 -0.2500000
#> Corynebacterium_deserti Corynebacterium_durum
#> Acinetobacter_beijerinckii 0.0000000 -0.3000000
#> Acinetobacter_bouvetii -0.3952847 0.7826238
#> Acinetobacter_guillouiae -0.2500000 0.5000000
#> Acinetobacter_gyllenbergii -0.5441072 0.3535534
#> Acinetobacter_indicus 1.0000000 -0.7071068
#> Acinetobacter_johnsonii -0.3952847 -0.1118034
#> Corynebacterium_efficiens Corynebacterium_falsenii
#> Acinetobacter_beijerinckii 0.0000000 -0.7071068
#> Acinetobacter_bouvetii -0.8603090 0.3952847
#> Acinetobacter_guillouiae -0.1578947 1.0000000
#> Acinetobacter_gyllenbergii 0.1538968 0.3627381
#> Acinetobacter_indicus -0.2368421 -0.2500000
#> Acinetobacter_johnsonii -0.5441072 0.3952847
#> Corynebacterium_freneyi Corynebacterium_genitalium
#> Acinetobacter_beijerinckii 0.4472136 0.0000000
#> Acinetobacter_bouvetii 0.5000000 -0.4472136
#> Acinetobacter_guillouiae -0.4472136 0.8207827
#> Acinetobacter_gyllenbergii 0.7905694 1.0000000
#> Acinetobacter_indicus -0.3952847 -0.2051957
#> Acinetobacter_johnsonii 0.5000000 -0.7071068
#> Corynebacterium_glutamicum
#> Acinetobacter_beijerinckii -0.56428809
#> Acinetobacter_bouvetii -0.05735393
#> Acinetobacter_guillouiae 0.72547625
#> Acinetobacter_gyllenbergii -0.26315789
#> Acinetobacter_indicus 0.36273813
#> Acinetobacter_johnsonii -0.05735393
#> Corynebacterium_glyciniphilum
#> Acinetobacter_beijerinckii 0.0000000
#> Acinetobacter_bouvetii 0.7905694
#> Acinetobacter_guillouiae 0.0000000
#> Acinetobacter_gyllenbergii 1.0000000
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii 0.7905694
#> Corynebacterium_jeikeium Corynebacterium_lactis
#> Acinetobacter_beijerinckii -0.5441072 0.0000000
#> Acinetobacter_bouvetii 0.0000000 -0.3952847
#> Acinetobacter_guillouiae -0.8157895 -0.2500000
#> Acinetobacter_gyllenbergii -0.5642881 -0.5441072
#> Acinetobacter_indicus -0.2894737 1.0000000
#> Acinetobacter_johnsonii 0.3627381 -0.3952847
#> Corynebacterium_lipophiloflavum
#> Acinetobacter_beijerinckii -0.4472136
#> Acinetobacter_bouvetii 1.0000000
#> Acinetobacter_guillouiae 0.4472136
#> Acinetobacter_gyllenbergii 0.7905694
#> Acinetobacter_indicus -0.3952847
#> Acinetobacter_johnsonii 0.5000000
#> Corynebacterium_maris Corynebacterium_matruchotii
#> Acinetobacter_beijerinckii 0.3952847 0.7071068
#> Acinetobacter_bouvetii -0.6250000 0.7905694
#> Acinetobacter_guillouiae 0.2867697 -0.2500000
#> Acinetobacter_gyllenbergii 0.6708204 0.7254763
#> Acinetobacter_indicus 0.4588315 -0.2500000
#> Acinetobacter_johnsonii -0.3952847 -0.3952847
#> Corynebacterium_nuruki Corynebacterium_otitidis
#> Acinetobacter_beijerinckii 0.3535534 -0.2500000
#> Acinetobacter_bouvetii -0.3952847 -0.3952847
#> Acinetobacter_guillouiae 0.3535534 0.1813691
#> Acinetobacter_gyllenbergii -0.2500000 0.7071068
#> Acinetobacter_indicus -0.2500000 0.0000000
#> Acinetobacter_johnsonii -0.3952847 -0.2500000
#> Corynebacterium_pseudodiphtheriticum
#> Acinetobacter_beijerinckii 0.44721360
#> Acinetobacter_bouvetii 0.12500000
#> Acinetobacter_guillouiae -0.39528471
#> Acinetobacter_gyllenbergii -0.05735393
#> Acinetobacter_indicus 0.79056942
#> Acinetobacter_johnsonii -0.62500000
#> Corynebacterium_pyruviciproducens
#> Acinetobacter_beijerinckii -0.3535534
#> Acinetobacter_bouvetii -0.3952847
#> Acinetobacter_guillouiae -0.3535534
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus 1.0000000
#> Acinetobacter_johnsonii 0.3952847
#> Corynebacterium_sphenisci
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii 0.1250000
#> Acinetobacter_guillouiae 0.4588315
#> Acinetobacter_gyllenbergii 0.1118034
#> Acinetobacter_indicus -0.8603090
#> Acinetobacter_johnsonii -0.3952847
#> Corynebacterium_terpenotabidum
#> Acinetobacter_beijerinckii 0.6708204
#> Acinetobacter_bouvetii 0.5000000
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii 0.3441236
#> Acinetobacter_indicus 0.3952847
#> Acinetobacter_johnsonii -0.6250000
#> Corynebacterium_timonense
#> Acinetobacter_beijerinckii 0.2051957
#> Acinetobacter_bouvetii -0.2867697
#> Acinetobacter_guillouiae -0.8207827
#> Acinetobacter_gyllenbergii 0.1813691
#> Acinetobacter_indicus 0.7254763
#> Acinetobacter_johnsonii 0.6308933
#> Corynebacterium_tuscaniense
#> Acinetobacter_beijerinckii 0.70710678
#> Acinetobacter_bouvetii 0.33541020
#> Acinetobacter_guillouiae 0.05129892
#> Acinetobacter_gyllenbergii -0.20000000
#> Acinetobacter_indicus 0.82078268
#> Acinetobacter_johnsonii 0.35355339
#> Corynebacterium_urealyticum
#> Acinetobacter_beijerinckii -0.4472136
#> Acinetobacter_bouvetii 0.1250000
#> Acinetobacter_guillouiae 0.7905694
#> Acinetobacter_gyllenbergii 0.0000000
#> Acinetobacter_indicus -0.3952847
#> Acinetobacter_johnsonii 0.1250000
#> Corynebacterium_variabile Corynebacterium_xerosis
#> Acinetobacter_beijerinckii 0.9000000 1.0000000
#> Acinetobacter_bouvetii -0.2236068 -0.3952847
#> Acinetobacter_guillouiae -0.3000000 0.1813691
#> Acinetobacter_gyllenbergii 0.0000000 0.0000000
#> Acinetobacter_indicus -0.7071068 0.7254763
#> Acinetobacter_johnsonii -0.4472136 -0.2500000
#> Cutibacterium_avidum Delftia_acidovorans
#> Acinetobacter_beijerinckii 0.05129892 0.0000000
#> Acinetobacter_bouvetii 0.91766294 0.7905694
#> Acinetobacter_guillouiae 0.36273813 0.0000000
#> Acinetobacter_gyllenbergii 1.00000000 1.0000000
#> Acinetobacter_indicus -0.54410719 -0.2500000
#> Acinetobacter_johnsonii 0.22941573 0.7905694
#> Dolosigranulum_pigrum Enterobacter_cloacae
#> Acinetobacter_beijerinckii 0.39528471 -0.4472136
#> Acinetobacter_bouvetii -0.62500000 0.1250000
#> Acinetobacter_guillouiae -0.22941573 0.7905694
#> Acinetobacter_gyllenbergii -0.33541020 0.0000000
#> Acinetobacter_indicus -0.05735393 -0.3952847
#> Acinetobacter_johnsonii -0.39528471 0.1250000
#> Enterobacter_hormaechei Escherichia_coli
#> Acinetobacter_beijerinckii -0.7071068 -0.2500000
#> Acinetobacter_bouvetii 0.3952847 -0.3952847
#> Acinetobacter_guillouiae 0.7071068 0.1813691
#> Acinetobacter_gyllenbergii -0.2500000 0.7071068
#> Acinetobacter_indicus -0.2500000 0.0000000
#> Acinetobacter_johnsonii -0.3952847 -0.2500000
#> Haemophilus_influenzae Haemophilus_sputorum
#> Acinetobacter_beijerinckii 0.6000000 0.0000000
#> Acinetobacter_bouvetii 0.1118034 0.7905694
#> Acinetobacter_guillouiae -0.3535534 0.0000000
#> Acinetobacter_gyllenbergii 0.1025978 1.0000000
#> Acinetobacter_indicus -0.7071068 -0.2500000
#> Acinetobacter_johnsonii -0.2236068 0.7905694
#> Kocuria_rhizophila Listeria_floridensis
#> Acinetobacter_beijerinckii 0.0000000 -0.7071068
#> Acinetobacter_bouvetii -0.1118034 0.3952847
#> Acinetobacter_guillouiae -0.8720816 1.0000000
#> Acinetobacter_gyllenbergii -0.8000000 0.3627381
#> Acinetobacter_indicus 0.1025978 -0.2500000
#> Acinetobacter_johnsonii 0.3535534 0.3952847
#> Listeria_grayi Listeria_monocytogenes
#> Acinetobacter_beijerinckii -0.3535534 0.6123724
#> Acinetobacter_bouvetii -0.3952847 -0.6454972
#> Acinetobacter_guillouiae -0.3535534 -0.1480872
#> Acinetobacter_gyllenbergii -0.2500000 -0.2886751
#> Acinetobacter_indicus 1.0000000 0.1480872
#> Acinetobacter_johnsonii 0.3952847 -0.4082483
#> Moraxella_atlantae Moraxella_caprae
#> Acinetobacter_beijerinckii -0.7071068 0.0000000
#> Acinetobacter_bouvetii 0.3952847 0.7905694
#> Acinetobacter_guillouiae 1.0000000 0.0000000
#> Acinetobacter_gyllenbergii 0.3627381 1.0000000
#> Acinetobacter_indicus -0.2500000 -0.2500000
#> Acinetobacter_johnsonii 0.3952847 0.7905694
#> Moraxella_cuniculi Moraxella_porci
#> Acinetobacter_beijerinckii -0.2500000 -0.7071068
#> Acinetobacter_bouvetii -0.3952847 0.3952847
#> Acinetobacter_guillouiae 0.1813691 1.0000000
#> Acinetobacter_gyllenbergii 0.7071068 0.3627381
#> Acinetobacter_indicus 0.0000000 -0.2500000
#> Acinetobacter_johnsonii -0.2500000 0.3952847
#> Mycoplasma_genitalium Mycoplasma_testudinis
#> Acinetobacter_beijerinckii -0.1000000 -0.3952847
#> Acinetobacter_bouvetii -0.2236068 0.5000000
#> Acinetobacter_guillouiae 0.3000000 -0.9176629
#> Acinetobacter_gyllenbergii -0.7071068 -0.8944272
#> Acinetobacter_indicus -0.3535534 0.0000000
#> Acinetobacter_johnsonii -0.8944272 0.7905694
#> Noviherbaspirillum_massiliense Other
#> Acinetobacter_beijerinckii -0.3000000 0.0000000
#> Acinetobacter_bouvetii -0.8944272 0.7905694
#> Acinetobacter_guillouiae -0.3535534 0.0000000
#> Acinetobacter_gyllenbergii -0.6668859 1.0000000
#> Acinetobacter_indicus 0.0000000 -0.2500000
#> Acinetobacter_johnsonii 0.4472136 0.7905694
#> Paracoccus_aminophilus Paracoccus_denitrificans
#> Acinetobacter_beijerinckii 0.3952847 -0.56428809
#> Acinetobacter_bouvetii 0.5000000 -0.05735393
#> Acinetobacter_guillouiae -0.5735393 0.72547625
#> Acinetobacter_gyllenbergii -0.6708204 -0.26315789
#> Acinetobacter_indicus 0.8029551 0.36273813
#> Acinetobacter_johnsonii 0.7905694 -0.05735393
#> Pseudomonas_fulva Pseudomonas_indica
#> Acinetobacter_beijerinckii 0.3535534 -0.3952847
#> Acinetobacter_bouvetii -0.3952847 0.5000000
#> Acinetobacter_guillouiae 0.3535534 -0.5735393
#> Acinetobacter_gyllenbergii -0.2500000 -0.2236068
#> Acinetobacter_indicus -0.2500000 0.3441236
#> Acinetobacter_johnsonii -0.3952847 0.7905694
#> Pseudomonas_mendocina Pseudomonas_nitroreducens
#> Acinetobacter_beijerinckii 0.1538968 -0.3354102
#> Acinetobacter_bouvetii 0.6882472 0.1250000
#> Acinetobacter_guillouiae 0.0000000 -0.3354102
#> Acinetobacter_gyllenbergii 0.8947368 0.3952847
#> Acinetobacter_indicus -0.5441072 0.7905694
#> Acinetobacter_johnsonii 0.3441236 0.8750000
#> Pseudomonas_protegens Pseudomonas_putida
#> Acinetobacter_beijerinckii -0.2500000 0.1118034
#> Acinetobacter_bouvetii 0.3952847 0.1250000
#> Acinetobacter_guillouiae 0.7254763 -0.3952847
#> Acinetobacter_gyllenbergii 0.3535534 0.4588315
#> Acinetobacter_indicus -0.5441072 -0.3952847
#> Acinetobacter_johnsonii -0.2500000 0.5000000
#> Pseudomonas_resinovorans Pseudomonas_syringae
#> Acinetobacter_beijerinckii 0.56428809 1.0000000
#> Acinetobacter_bouvetii 0.34412360 0.1250000
#> Acinetobacter_guillouiae -0.05129892 0.2867697
#> Acinetobacter_gyllenbergii 0.72547625 0.7905694
#> Acinetobacter_indicus -0.54410719 -0.6250000
#> Acinetobacter_johnsonii 0.34412360 0.2236068
#> Staphylococcus_aureus Staphylococcus_capitis
#> Acinetobacter_beijerinckii -0.3952847 0.8207827
#> Acinetobacter_bouvetii -0.3952847 -0.3627381
#> Acinetobacter_guillouiae 0.5000000 -0.3627381
#> Acinetobacter_gyllenbergii -0.6250000 -0.3627381
#> Acinetobacter_indicus -0.3952847 0.5526316
#> Acinetobacter_johnsonii 0.7905694 0.7254763
#> Staphylococcus_epidermidis
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii 0.7905694
#> Acinetobacter_guillouiae -0.3535534
#> Acinetobacter_gyllenbergii 0.3952847
#> Acinetobacter_indicus -0.4082483
#> Acinetobacter_johnsonii -0.3952847
#> Staphylococcus_haemolyticus
#> Acinetobacter_beijerinckii 0.2236068
#> Acinetobacter_bouvetii 0.7905694
#> Acinetobacter_guillouiae -0.1250000
#> Acinetobacter_gyllenbergii 0.1250000
#> Acinetobacter_indicus -0.3952847
#> Acinetobacter_johnsonii 0.7905694
#> Staphylococcus_lugdunensis
#> Acinetobacter_beijerinckii 0.05129892
#> Acinetobacter_bouvetii 0.35355339
#> Acinetobacter_guillouiae 0.11180340
#> Acinetobacter_gyllenbergii 0.90000000
#> Acinetobacter_indicus 1.00000000
#> Acinetobacter_johnsonii 0.87208160
#> Staphylococcus_pseudintermedius
#> Acinetobacter_beijerinckii -0.5161854
#> Acinetobacter_bouvetii 0.0000000
#> Acinetobacter_guillouiae 0.0000000
#> Acinetobacter_gyllenbergii -0.5441072
#> Acinetobacter_indicus -0.2867697
#> Acinetobacter_johnsonii 0.6668859
#> Staphylococcus_saprophyticus Staphylococcus_simiae
#> Acinetobacter_beijerinckii -0.2500000 0.52704628
#> Acinetobacter_bouvetii -0.2500000 -0.41247896
#> Acinetobacter_guillouiae 0.7254763 0.15214515
#> Acinetobacter_gyllenbergii -0.2500000 -0.05892557
#> Acinetobacter_indicus -0.2500000 -0.55901699
#> Acinetobacter_johnsonii 0.7254763 0.64888568
#> Streptococcus_anginosus Streptococcus_cristatus
#> Acinetobacter_beijerinckii -0.2236068 0.3952847
#> Acinetobacter_bouvetii 0.2236068 0.7071068
#> Acinetobacter_guillouiae -0.7071068 0.7071068
#> Acinetobacter_gyllenbergii 0.3535534 0.3627381
#> Acinetobacter_indicus -0.7071068 -0.2500000
#> Acinetobacter_johnsonii 0.2000000 0.1863390
#> Streptococcus_gallolyticus Streptococcus_mitis
#> Acinetobacter_beijerinckii -0.7071068 0.7254763
#> Acinetobacter_bouvetii 0.0000000 -0.2500000
#> Acinetobacter_guillouiae 0.2236068 -0.2500000
#> Acinetobacter_gyllenbergii 0.2000000 0.7254763
#> Acinetobacter_indicus 0.7071068 0.7254763
#> Acinetobacter_johnsonii -0.7071068 -0.2500000
#> Streptococcus_mutans Streptococcus_parasanguinis
#> Acinetobacter_beijerinckii -0.4082483 0.7254763
#> Acinetobacter_bouvetii -0.3952847 0.3627381
#> Acinetobacter_guillouiae -0.2500000 0.7254763
#> Acinetobacter_gyllenbergii -0.5441072 -0.1025978
#> Acinetobacter_indicus 0.7254763 -0.5441072
#> Acinetobacter_johnsonii 1.0000000 0.3627381
#> Streptococcus_pyogenes Streptococcus_sanguinis
#> Acinetobacter_beijerinckii 0.0000000 0.5000000
#> Acinetobacter_bouvetii 0.0000000 -0.1118034
#> Acinetobacter_guillouiae -0.2500000 -0.3952847
#> Acinetobacter_gyllenbergii -0.5590170 0.3952847
#> Acinetobacter_indicus -0.3535534 -0.6454972
#> Acinetobacter_johnsonii 0.0000000 -0.6250000
#> Streptococcus_sobrinus Streptococcus_suis
#> Acinetobacter_beijerinckii 0.7905694 -0.2500000
#> Acinetobacter_bouvetii 0.3441236 -0.5441072
#> Acinetobacter_guillouiae -0.8603090 0.7254763
#> Acinetobacter_gyllenbergii 0.3952847 1.0000000
#> Acinetobacter_indicus 0.1250000 0.1813691
#> Acinetobacter_johnsonii 0.8944272 0.0000000
#> Streptococcus_thermophilus Weissella_koreensis
#> Acinetobacter_beijerinckii -0.2500000 0.0000000
#> Acinetobacter_bouvetii -0.7071068 -0.3162278
#> Acinetobacter_guillouiae -0.2500000 0.1000000
#> Acinetobacter_gyllenbergii -0.2500000 -0.4000000
#> Acinetobacter_indicus -0.7071068 0.7071068
#> Acinetobacter_johnsonii 0.7905694 0.2000000
#> Weissella_oryzae Weissella_paramesenteroides
#> Acinetobacter_beijerinckii 1.0000000 0.3627381
#> Acinetobacter_bouvetii -0.2500000 -0.2500000
#> Acinetobacter_guillouiae 0.6123724 -0.3952847
#> Acinetobacter_gyllenbergii 0.7905694 -0.3535534
#> Acinetobacter_indicus -0.3952847 0.7905694
#> Acinetobacter_johnsonii -0.3952847 -0.2500000
#>
#> , , S5
#>
#> Acinetobacter_beijerinckii Acinetobacter_bouvetii
#> Acinetobacter_beijerinckii -0.8885233 0.3952847
#> Acinetobacter_bouvetii -0.4082483 -0.3952847
#> Acinetobacter_guillouiae -0.1480872 0.4472136
#> Acinetobacter_gyllenbergii 0.8660254 -0.1250000
#> Acinetobacter_indicus 0.6123724 -0.8603090
#> Acinetobacter_johnsonii -0.6454972 0.2236068
#> Acinetobacter_guillouiae Acinetobacter_gyllenbergii
#> Acinetobacter_beijerinckii 0.1118034 0.4564355
#> Acinetobacter_bouvetii 0.6708204 0.3535534
#> Acinetobacter_guillouiae -0.3952847 0.1767767
#> Acinetobacter_gyllenbergii -0.7826238 0.1767767
#> Acinetobacter_indicus -0.3952847 1.0000000
#> Acinetobacter_johnsonii 0.3952847 0.3162278
#> Acinetobacter_indicus Acinetobacter_johnsonii
#> Acinetobacter_beijerinckii 0.8944272 -0.3627381
#> Acinetobacter_bouvetii -0.3000000 0.3535534
#> Acinetobacter_guillouiae 0.4472136 1.0000000
#> Acinetobacter_gyllenbergii -0.7071068 -0.3952847
#> Acinetobacter_indicus 0.3535534 -0.2500000
#> Acinetobacter_johnsonii -0.3000000 -0.2500000
#> Acinetobacter_parvus Acinetobacter_pittii
#> Acinetobacter_beijerinckii 0.1000000 1.0000000
#> Acinetobacter_bouvetii -0.8944272 0.3535534
#> Acinetobacter_guillouiae 0.5642881 -0.2500000
#> Acinetobacter_gyllenbergii 0.3000000 -0.2500000
#> Acinetobacter_indicus -0.5441072 -0.5441072
#> Acinetobacter_johnsonii -0.3952847 -0.2500000
#> Acinetobacter_radioresistens Acinetobacter_towneri
#> Acinetobacter_beijerinckii 0.7905694 -0.05735393
#> Acinetobacter_bouvetii -0.3952847 -0.54410719
#> Acinetobacter_guillouiae 0.5590170 0.00000000
#> Acinetobacter_gyllenbergii 0.3535534 -0.56428809
#> Acinetobacter_indicus 1.0000000 0.68824720
#> Acinetobacter_johnsonii -0.3535534 0.00000000
#> Acinetobacter_ursingii Aeromonas_hydrophila
#> Acinetobacter_beijerinckii -0.2500000 -0.54410719
#> Acinetobacter_bouvetii -0.3952847 0.35355339
#> Acinetobacter_guillouiae -0.2500000 -0.26315789
#> Acinetobacter_gyllenbergii 1.0000000 0.34412360
#> Acinetobacter_indicus -0.2500000 -0.05735393
#> Acinetobacter_johnsonii 0.0000000 0.23684211
#> Aeromonas_salmonicida Alkalihalophilus_pseudofirmus
#> Acinetobacter_beijerinckii 0.7254763 0.5590170
#> Acinetobacter_bouvetii 0.3627381 -0.3535534
#> Acinetobacter_guillouiae 0.5000000 -0.2500000
#> Acinetobacter_gyllenbergii -0.5441072 0.3535534
#> Acinetobacter_indicus 0.3627381 -0.2500000
#> Acinetobacter_johnsonii 0.2294157 -0.2500000
#> Brucella_anthropi Brucella_melitensis
#> Acinetobacter_beijerinckii 0.3952847 -0.7071068
#> Acinetobacter_bouvetii -0.4472136 0.3535534
#> Acinetobacter_guillouiae 1.0000000 -0.7071068
#> Acinetobacter_gyllenbergii 0.3952847 0.0000000
#> Acinetobacter_indicus 1.0000000 0.3535534
#> Acinetobacter_johnsonii -0.3354102 -0.2236068
#> Corynebacterium_accolens
#> Acinetobacter_beijerinckii 0.0000000
#> Acinetobacter_bouvetii -0.3952847
#> Acinetobacter_guillouiae 0.7905694
#> Acinetobacter_gyllenbergii -0.7254763
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii -0.3952847
#> Corynebacterium_ammoniagenes
#> Acinetobacter_beijerinckii -0.5441072
#> Acinetobacter_bouvetii -0.2500000
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii -0.3952847
#> Acinetobacter_indicus 0.7905694
#> Acinetobacter_johnsonii -0.2500000
#> Corynebacterium_appendicis
#> Acinetobacter_beijerinckii -0.7071068
#> Acinetobacter_bouvetii 0.3000000
#> Acinetobacter_guillouiae -0.7071068
#> Acinetobacter_gyllenbergii -0.7071068
#> Acinetobacter_indicus -0.7071068
#> Acinetobacter_johnsonii -0.5642881
#> Corynebacterium_argentoratense
#> Acinetobacter_beijerinckii 1.0000000
#> Acinetobacter_bouvetii 0.3952847
#> Acinetobacter_guillouiae 1.0000000
#> Acinetobacter_gyllenbergii -0.3354102
#> Acinetobacter_indicus 0.1250000
#> Acinetobacter_johnsonii -0.6454972
#> Corynebacterium_aurimucosum Corynebacterium_callunae
#> Acinetobacter_beijerinckii -0.2500000 -0.8944272
#> Acinetobacter_bouvetii 0.3535534 0.8207827
#> Acinetobacter_guillouiae -0.2500000 -0.3535534
#> Acinetobacter_gyllenbergii 0.3952847 0.6708204
#> Acinetobacter_indicus 0.7905694 0.3000000
#> Acinetobacter_johnsonii -0.2500000 0.1000000
#> Corynebacterium_casei Corynebacterium_ciconiae
#> Acinetobacter_beijerinckii 0.7905694 -0.4082483
#> Acinetobacter_bouvetii 0.1250000 -0.4082483
#> Acinetobacter_guillouiae -0.6250000 -0.4082483
#> Acinetobacter_gyllenbergii 0.7905694 -0.1480872
#> Acinetobacter_indicus -0.3952847 0.6123724
#> Acinetobacter_johnsonii -0.6250000 -0.4082483
#> Corynebacterium_deserti Corynebacterium_durum
#> Acinetobacter_beijerinckii -0.6250000 -0.2500000
#> Acinetobacter_bouvetii -0.2236068 -0.3952847
#> Acinetobacter_guillouiae -0.6250000 -0.3952847
#> Acinetobacter_gyllenbergii 0.9682458 -0.2500000
#> Acinetobacter_indicus 1.0000000 -0.2500000
#> Acinetobacter_johnsonii 0.7905694 -0.2500000
#> Corynebacterium_efficiens Corynebacterium_falsenii
#> Acinetobacter_beijerinckii -0.5441072 -0.3952847
#> Acinetobacter_bouvetii -0.3441236 1.0000000
#> Acinetobacter_guillouiae -0.3077935 -0.2500000
#> Acinetobacter_gyllenbergii -0.6668859 -0.3952847
#> Acinetobacter_indicus -0.6315789 0.3535534
#> Acinetobacter_johnsonii -0.5441072 -0.2500000
#> Corynebacterium_freneyi Corynebacterium_genitalium
#> Acinetobacter_beijerinckii -0.3627381 0.4472136
#> Acinetobacter_bouvetii -0.5000000 -0.8660254
#> Acinetobacter_guillouiae -0.7254763 -0.7826238
#> Acinetobacter_gyllenbergii -0.3627381 -0.3535534
#> Acinetobacter_indicus -0.3947368 0.5642881
#> Acinetobacter_johnsonii 0.6315789 -0.5642881
#> Corynebacterium_glutamicum
#> Acinetobacter_beijerinckii 0.7905694
#> Acinetobacter_bouvetii -0.2500000
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus 0.7071068
#> Acinetobacter_johnsonii 1.0000000
#> Corynebacterium_glyciniphilum
#> Acinetobacter_beijerinckii 0.0000000
#> Acinetobacter_bouvetii 0.3535534
#> Acinetobacter_guillouiae 0.7254763
#> Acinetobacter_gyllenbergii 1.0000000
#> Acinetobacter_indicus 0.1863390
#> Acinetobacter_johnsonii -0.7071068
#> Corynebacterium_jeikeium Corynebacterium_lactis
#> Acinetobacter_beijerinckii -0.2500000 -0.2500000
#> Acinetobacter_bouvetii -0.3952847 -0.2500000
#> Acinetobacter_guillouiae -0.7071068 0.7254763
#> Acinetobacter_gyllenbergii -0.2500000 0.7254763
#> Acinetobacter_indicus -0.2500000 -0.2500000
#> Acinetobacter_johnsonii -0.4082483 0.7905694
#> Corynebacterium_lipophiloflavum
#> Acinetobacter_beijerinckii -0.3354102
#> Acinetobacter_bouvetii -0.3535534
#> Acinetobacter_guillouiae 0.8720816
#> Acinetobacter_gyllenbergii -0.9746794
#> Acinetobacter_indicus -0.7071068
#> Acinetobacter_johnsonii -0.3077935
#> Corynebacterium_maris Corynebacterium_matruchotii
#> Acinetobacter_beijerinckii 1.0000000 0.8029551
#> Acinetobacter_bouvetii -0.2500000 0.3952847
#> Acinetobacter_guillouiae -0.3535534 0.2946278
#> Acinetobacter_gyllenbergii -0.2500000 0.2236068
#> Acinetobacter_indicus 1.0000000 -0.1118034
#> Acinetobacter_johnsonii 0.3535534 0.7905694
#> Corynebacterium_nuruki Corynebacterium_otitidis
#> Acinetobacter_beijerinckii 0.0000000 0.0000000
#> Acinetobacter_bouvetii 1.0000000 -0.5441072
#> Acinetobacter_guillouiae -0.2500000 1.0000000
#> Acinetobacter_gyllenbergii 0.6123724 -0.3952847
#> Acinetobacter_indicus 0.7905694 0.3535534
#> Acinetobacter_johnsonii -0.3952847 -0.3952847
#> Corynebacterium_pseudodiphtheriticum
#> Acinetobacter_beijerinckii 0.3627381
#> Acinetobacter_bouvetii -0.5441072
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii 0.1813691
#> Acinetobacter_indicus 0.7071068
#> Acinetobacter_johnsonii -0.2500000
#> Corynebacterium_pyruviciproducens
#> Acinetobacter_beijerinckii 1.0000000
#> Acinetobacter_bouvetii 0.7071068
#> Acinetobacter_guillouiae -0.3535534
#> Acinetobacter_gyllenbergii 0.6000000
#> Acinetobacter_indicus -0.2236068
#> Acinetobacter_johnsonii -0.4103913
#> Corynebacterium_sphenisci
#> Acinetobacter_beijerinckii 0.7453560
#> Acinetobacter_bouvetii 0.3535534
#> Acinetobacter_guillouiae 0.7071068
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus -0.3535534
#> Acinetobacter_johnsonii -0.2500000
#> Corynebacterium_terpenotabidum
#> Acinetobacter_beijerinckii -0.3535534
#> Acinetobacter_bouvetii 0.5773503
#> Acinetobacter_guillouiae 0.4472136
#> Acinetobacter_gyllenbergii 0.4472136
#> Acinetobacter_indicus 0.1118034
#> Acinetobacter_johnsonii 0.9486833
#> Corynebacterium_timonense
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii -0.1250000
#> Acinetobacter_guillouiae 0.4472136
#> Acinetobacter_gyllenbergii -0.6250000
#> Acinetobacter_indicus 0.7905694
#> Acinetobacter_johnsonii 0.3952847
#> Corynebacterium_tuscaniense
#> Acinetobacter_beijerinckii 0.3627381
#> Acinetobacter_bouvetii -0.2894737
#> Acinetobacter_guillouiae -0.8720816
#> Acinetobacter_gyllenbergii -0.5441072
#> Acinetobacter_indicus 0.3441236
#> Acinetobacter_johnsonii -0.5441072
#> Corynebacterium_urealyticum
#> Acinetobacter_beijerinckii -0.7071068
#> Acinetobacter_bouvetii 0.0000000
#> Acinetobacter_guillouiae -0.1118034
#> Acinetobacter_gyllenbergii -0.3590924
#> Acinetobacter_indicus 1.0000000
#> Acinetobacter_johnsonii 1.0000000
#> Corynebacterium_variabile Corynebacterium_xerosis
#> Acinetobacter_beijerinckii 0.2236068 -0.1813691
#> Acinetobacter_bouvetii 0.7071068 0.5735393
#> Acinetobacter_guillouiae -0.2236068 0.8207827
#> Acinetobacter_gyllenbergii 0.7071068 -0.7254763
#> Acinetobacter_indicus 0.3000000 -0.1813691
#> Acinetobacter_johnsonii -0.7826238 0.9210526
#> Cutibacterium_avidum Delftia_acidovorans
#> Acinetobacter_beijerinckii -0.1118034 -0.05735393
#> Acinetobacter_bouvetii 0.8944272 -0.87208160
#> Acinetobacter_guillouiae -0.1118034 0.72547625
#> Acinetobacter_gyllenbergii 0.6000000 0.36273813
#> Acinetobacter_indicus 0.0000000 -0.45962736
#> Acinetobacter_johnsonii 0.3535534 0.30779351
#> Dolosigranulum_pigrum Enterobacter_cloacae
#> Acinetobacter_beijerinckii -0.3952847 -0.2500000
#> Acinetobacter_bouvetii 0.7826238 0.0000000
#> Acinetobacter_guillouiae 0.3627381 -0.3952847
#> Acinetobacter_gyllenbergii -0.3535534 -0.7071068
#> Acinetobacter_indicus -0.1813691 -0.3952847
#> Acinetobacter_johnsonii -0.2500000 -0.2500000
#> Enterobacter_hormaechei Escherichia_coli
#> Acinetobacter_beijerinckii 0.35355339 -0.22360680
#> Acinetobacter_bouvetii 0.00000000 -0.39528471
#> Acinetobacter_guillouiae 0.05129892 0.79056942
#> Acinetobacter_gyllenbergii 0.00000000 -0.05892557
#> Acinetobacter_indicus 0.70710678 0.50000000
#> Acinetobacter_johnsonii 0.30000000 -0.39528471
#> Haemophilus_influenzae Haemophilus_sputorum
#> Acinetobacter_beijerinckii 0.3952847 0.40000000
#> Acinetobacter_bouvetii -0.1767767 0.82078268
#> Acinetobacter_guillouiae 0.1118034 -0.35355339
#> Acinetobacter_gyllenbergii 0.8249579 0.60000000
#> Acinetobacter_indicus -0.3952847 0.05129892
#> Acinetobacter_johnsonii -0.8029551 0.33541020
#> Kocuria_rhizophila Listeria_floridensis
#> Acinetobacter_beijerinckii 0.3535534 -0.2500000
#> Acinetobacter_bouvetii -0.3952847 -0.2500000
#> Acinetobacter_guillouiae -0.2500000 -0.7071068
#> Acinetobacter_gyllenbergii -0.2500000 -0.2500000
#> Acinetobacter_indicus 0.3627381 -0.2500000
#> Acinetobacter_johnsonii -0.5441072 0.3952847
#> Listeria_grayi Listeria_monocytogenes
#> Acinetobacter_beijerinckii -0.4124790 0.7453560
#> Acinetobacter_bouvetii 1.0000000 -0.2500000
#> Acinetobacter_guillouiae -0.3952847 -0.7254763
#> Acinetobacter_gyllenbergii 0.1118034 -0.5441072
#> Acinetobacter_indicus -0.1250000 -0.5441072
#> Acinetobacter_johnsonii 0.3952847 -0.2500000
#> Moraxella_atlantae Moraxella_caprae
#> Acinetobacter_beijerinckii -0.2236068 -0.2500000
#> Acinetobacter_bouvetii -0.5161854 0.7254763
#> Acinetobacter_guillouiae -0.6250000 0.7254763
#> Acinetobacter_gyllenbergii 0.3952847 -0.2500000
#> Acinetobacter_indicus -0.3952847 0.7254763
#> Acinetobacter_johnsonii 0.6708204 1.0000000
#> Moraxella_cuniculi Moraxella_porci
#> Acinetobacter_beijerinckii -0.3952847 0.3535534
#> Acinetobacter_bouvetii 0.3952847 0.7905694
#> Acinetobacter_guillouiae 0.1250000 -0.2500000
#> Acinetobacter_gyllenbergii -0.6250000 -0.3952847
#> Acinetobacter_indicus 0.3952847 0.7905694
#> Acinetobacter_johnsonii -0.3952847 1.0000000
#> Mycoplasma_genitalium Mycoplasma_testudinis
#> Acinetobacter_beijerinckii -0.86030900 -0.3535534
#> Acinetobacter_bouvetii -0.05735393 0.0000000
#> Acinetobacter_guillouiae -0.39528471 0.0000000
#> Acinetobacter_gyllenbergii -0.39528471 0.0000000
#> Acinetobacter_indicus -0.39528471 -0.4472136
#> Acinetobacter_johnsonii 0.12500000 0.3354102
#> Noviherbaspirillum_massiliense Other
#> Acinetobacter_beijerinckii -0.3952847 0.7826238
#> Acinetobacter_bouvetii 0.9176629 0.0000000
#> Acinetobacter_guillouiae 0.7905694 0.3535534
#> Acinetobacter_gyllenbergii -0.3952847 -0.9746794
#> Acinetobacter_indicus -0.1250000 0.7071068
#> Acinetobacter_johnsonii -0.2236068 -0.9000000
#> Paracoccus_aminophilus Paracoccus_denitrificans
#> Acinetobacter_beijerinckii -0.3952847 -0.2500000
#> Acinetobacter_bouvetii -0.3952847 -0.2500000
#> Acinetobacter_guillouiae -0.2500000 0.3952847
#> Acinetobacter_gyllenbergii -0.3952847 0.0000000
#> Acinetobacter_indicus -0.2500000 -0.2500000
#> Acinetobacter_johnsonii -0.7071068 -0.2500000
#> Pseudomonas_fulva Pseudomonas_indica
#> Acinetobacter_beijerinckii -0.6668859 -0.2500000
#> Acinetobacter_bouvetii -0.3441236 -0.3952847
#> Acinetobacter_guillouiae 0.3441236 0.3535534
#> Acinetobacter_gyllenbergii -0.3441236 -0.2500000
#> Acinetobacter_indicus -0.4616903 -0.2500000
#> Acinetobacter_johnsonii -0.5441072 0.1863390
#> Pseudomonas_mendocina Pseudomonas_nitroreducens
#> Acinetobacter_beijerinckii 0.5789474 -0.3952847
#> Acinetobacter_bouvetii -0.5441072 -0.2500000
#> Acinetobacter_guillouiae 0.5642881 0.0000000
#> Acinetobacter_gyllenbergii 0.3627381 -0.3952847
#> Acinetobacter_indicus -0.3535534 -0.7071068
#> Acinetobacter_johnsonii -0.1813691 -0.3952847
#> Pseudomonas_protegens Pseudomonas_putida
#> Acinetobacter_beijerinckii 0.8944272 -0.3952847
#> Acinetobacter_bouvetii -0.3952847 0.3535534
#> Acinetobacter_guillouiae -0.3952847 -0.2500000
#> Acinetobacter_gyllenbergii 0.9176629 -0.2500000
#> Acinetobacter_indicus -0.3952847 -0.5590170
#> Acinetobacter_johnsonii 0.7905694 -0.3952847
#> Pseudomonas_resinovorans Pseudomonas_syringae
#> Acinetobacter_beijerinckii -0.2500000 0.6668859
#> Acinetobacter_bouvetii 1.0000000 0.3000000
#> Acinetobacter_guillouiae -0.5590170 0.1538968
#> Acinetobacter_gyllenbergii 0.7071068 -0.7071068
#> Acinetobacter_indicus 0.1863390 0.3000000
#> Acinetobacter_johnsonii -0.2500000 0.3077935
#> Staphylococcus_aureus Staphylococcus_capitis
#> Acinetobacter_beijerinckii -0.05892557 -0.5441072
#> Acinetobacter_bouvetii -0.57975090 1.0000000
#> Acinetobacter_guillouiae 0.35355339 -0.2500000
#> Acinetobacter_gyllenbergii -0.55901699 0.0000000
#> Acinetobacter_indicus 0.18633900 -0.2500000
#> Acinetobacter_johnsonii -0.10814761 1.0000000
#> Staphylococcus_epidermidis
#> Acinetobacter_beijerinckii 0.00000000
#> Acinetobacter_bouvetii 0.48666426
#> Acinetobacter_guillouiae 0.45883147
#> Acinetobacter_gyllenbergii -0.54410719
#> Acinetobacter_indicus 0.56428809
#> Acinetobacter_johnsonii -0.05735393
#> Staphylococcus_haemolyticus
#> Acinetobacter_beijerinckii -0.05129892
#> Acinetobacter_bouvetii -0.45962736
#> Acinetobacter_guillouiae 0.36273813
#> Acinetobacter_gyllenbergii 0.92105263
#> Acinetobacter_indicus 0.13157895
#> Acinetobacter_johnsonii 1.00000000
#> Staphylococcus_lugdunensis
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii -0.3535534
#> Acinetobacter_guillouiae 0.0000000
#> Acinetobacter_gyllenbergii -0.3952847
#> Acinetobacter_indicus 1.0000000
#> Acinetobacter_johnsonii -0.2500000
#> Staphylococcus_pseudintermedius
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii -0.2500000
#> Acinetobacter_guillouiae 0.7254763
#> Acinetobacter_gyllenbergii 0.7254763
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii 0.7254763
#> Staphylococcus_saprophyticus Staphylococcus_simiae
#> Acinetobacter_beijerinckii 0.2236068 -0.2500000
#> Acinetobacter_bouvetii -0.3952847 0.0000000
#> Acinetobacter_guillouiae -0.3952847 -0.3952847
#> Acinetobacter_gyllenbergii -0.1250000 -0.2500000
#> Acinetobacter_indicus 0.5000000 -0.3952847
#> Acinetobacter_johnsonii -0.3952847 -0.3952847
#> Streptococcus_anginosus Streptococcus_cristatus
#> Acinetobacter_beijerinckii 0.3627381 -0.3952847
#> Acinetobacter_bouvetii 0.7254763 1.0000000
#> Acinetobacter_guillouiae 0.3627381 -0.2500000
#> Acinetobacter_gyllenbergii 1.0000000 0.0000000
#> Acinetobacter_indicus 1.0000000 0.0000000
#> Acinetobacter_johnsonii 1.0000000 -0.3952847
#> Streptococcus_gallolyticus Streptococcus_mitis
#> Acinetobacter_beijerinckii -0.5441072 -0.1118034
#> Acinetobacter_bouvetii -0.2500000 0.4472136
#> Acinetobacter_guillouiae -0.5441072 0.0000000
#> Acinetobacter_gyllenbergii -0.2500000 0.7071068
#> Acinetobacter_indicus -0.2500000 -0.4616903
#> Acinetobacter_johnsonii 0.7905694 -0.3535534
#> Streptococcus_mutans Streptococcus_parasanguinis
#> Acinetobacter_beijerinckii 1.0000000 -0.3952847
#> Acinetobacter_bouvetii 0.3952847 -0.3952847
#> Acinetobacter_guillouiae -0.3952847 -0.3952847
#> Acinetobacter_gyllenbergii -0.2500000 -0.1250000
#> Acinetobacter_indicus -0.3952847 0.3354102
#> Acinetobacter_johnsonii -0.2500000 -0.3952847
#> Streptococcus_pyogenes Streptococcus_sanguinis
#> Acinetobacter_beijerinckii 0.0000000 -0.2500000
#> Acinetobacter_bouvetii 0.0000000 -0.2500000
#> Acinetobacter_guillouiae -0.3952847 0.7905694
#> Acinetobacter_gyllenbergii -0.3952847 0.7071068
#> Acinetobacter_indicus -0.3952847 -0.2500000
#> Acinetobacter_johnsonii -0.7071068 -0.2500000
#> Streptococcus_sobrinus Streptococcus_suis
#> Acinetobacter_beijerinckii -0.5441072 -0.7071068
#> Acinetobacter_bouvetii 1.0000000 -0.1118034
#> Acinetobacter_guillouiae -0.5441072 -0.7071068
#> Acinetobacter_gyllenbergii 0.9746794 -0.1000000
#> Acinetobacter_indicus 0.0000000 0.2236068
#> Acinetobacter_johnsonii 0.0000000 -0.9000000
#> Streptococcus_thermophilus Weissella_koreensis
#> Acinetobacter_beijerinckii 0.0000000 0.70000000
#> Acinetobacter_bouvetii 0.4588315 0.70000000
#> Acinetobacter_guillouiae -0.6668859 0.00000000
#> Acinetobacter_gyllenbergii 0.0000000 0.05129892
#> Acinetobacter_indicus -0.6315789 -0.11180340
#> Acinetobacter_johnsonii 0.6882472 -0.70710678
#> Weissella_oryzae Weissella_paramesenteroides
#> Acinetobacter_beijerinckii 0.3535534 -0.2500000
#> Acinetobacter_bouvetii -0.4082483 -0.2500000
#> Acinetobacter_guillouiae 0.7905694 -0.5441072
#> Acinetobacter_gyllenbergii -0.2500000 -0.2500000
#> Acinetobacter_indicus -0.5441072 0.7254763
#> Acinetobacter_johnsonii 1.0000000 -0.5441072
#>
#> , , S6
#>
#> Acinetobacter_beijerinckii Acinetobacter_bouvetii
#> Acinetobacter_beijerinckii -0.05129892 -0.5441072
#> Acinetobacter_bouvetii -0.20519567 0.3441236
#> Acinetobacter_guillouiae 0.00000000 0.1315789
#> Acinetobacter_gyllenbergii 0.00000000 0.4616903
#> Acinetobacter_indicus -0.56428809 0.3627381
#> Acinetobacter_johnsonii 0.20000000 0.8029551
#> Acinetobacter_guillouiae Acinetobacter_gyllenbergii
#> Acinetobacter_beijerinckii -0.7071068 0.1538968
#> Acinetobacter_bouvetii -0.5441072 0.4472136
#> Acinetobacter_guillouiae 0.0000000 0.3535534
#> Acinetobacter_gyllenbergii 1.0000000 -0.7000000
#> Acinetobacter_indicus -0.7071068 1.0000000
#> Acinetobacter_johnsonii -0.7071068 0.0000000
#> Acinetobacter_indicus Acinetobacter_johnsonii
#> Acinetobacter_beijerinckii -0.7071068 0.36273813
#> Acinetobacter_bouvetii 0.7071068 0.68824720
#> Acinetobacter_guillouiae 0.3535534 -0.54410719
#> Acinetobacter_gyllenbergii 0.7071068 0.34412360
#> Acinetobacter_indicus 0.3535534 -0.02631579
#> Acinetobacter_johnsonii 0.3535534 -0.23684211
#> Acinetobacter_parvus Acinetobacter_pittii
#> Acinetobacter_beijerinckii 0.7826238 0.3535534
#> Acinetobacter_bouvetii -0.1767767 1.0000000
#> Acinetobacter_guillouiae -0.3952847 -0.2500000
#> Acinetobacter_gyllenbergii -0.3952847 -0.2500000
#> Acinetobacter_indicus -0.3952847 0.7071068
#> Acinetobacter_johnsonii 0.1250000 0.7254763
#> Acinetobacter_radioresistens Acinetobacter_towneri
#> Acinetobacter_beijerinckii -0.3952847 0.7254763
#> Acinetobacter_bouvetii -0.3952847 0.3952847
#> Acinetobacter_guillouiae -0.3952847 -0.2500000
#> Acinetobacter_gyllenbergii -0.3952847 -0.3952847
#> Acinetobacter_indicus 0.8029551 -0.2500000
#> Acinetobacter_johnsonii 0.1250000 -0.2500000
#> Acinetobacter_ursingii Aeromonas_hydrophila
#> Acinetobacter_beijerinckii 0.7905694 -0.8603090
#> Acinetobacter_bouvetii -0.2500000 0.3952847
#> Acinetobacter_guillouiae 1.0000000 0.3952847
#> Acinetobacter_gyllenbergii -0.3952847 0.8944272
#> Acinetobacter_indicus -0.2500000 -0.1118034
#> Acinetobacter_johnsonii -0.3952847 0.8249579
#> Aeromonas_salmonicida Alkalihalophilus_pseudofirmus
#> Acinetobacter_beijerinckii -0.28947368 0.7404361
#> Acinetobacter_bouvetii -0.28947368 -0.5773503
#> Acinetobacter_guillouiae -0.02631579 -0.2886751
#> Acinetobacter_gyllenbergii -0.26315789 -0.6123724
#> Acinetobacter_indicus -0.41039134 -0.6123724
#> Acinetobacter_johnsonii 0.36273813 -0.6123724
#> Brucella_anthropi Brucella_melitensis
#> Acinetobacter_beijerinckii 1.0000000 0.5000000
#> Acinetobacter_bouvetii 0.7905694 0.5000000
#> Acinetobacter_guillouiae -0.3535534 -0.3535534
#> Acinetobacter_gyllenbergii -0.3952847 -0.1538968
#> Acinetobacter_indicus 0.7254763 0.2236068
#> Acinetobacter_johnsonii 0.3952847 -0.7071068
#> Corynebacterium_accolens
#> Acinetobacter_beijerinckii 0.8000000
#> Acinetobacter_bouvetii 0.0000000
#> Acinetobacter_guillouiae 0.2236068
#> Acinetobacter_gyllenbergii -0.7071068
#> Acinetobacter_indicus -0.6668859
#> Acinetobacter_johnsonii 0.7071068
#> Corynebacterium_ammoniagenes
#> Acinetobacter_beijerinckii -0.25
#> Acinetobacter_bouvetii -0.25
#> Acinetobacter_guillouiae 0.00
#> Acinetobacter_gyllenbergii -0.25
#> Acinetobacter_indicus 0.00
#> Acinetobacter_johnsonii 0.00
#> Corynebacterium_appendicis
#> Acinetobacter_beijerinckii -0.5441072
#> Acinetobacter_bouvetii 0.3627381
#> Acinetobacter_guillouiae -0.6123724
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus -0.7254763
#> Acinetobacter_johnsonii 0.7071068
#> Corynebacterium_argentoratense
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii -0.3952847
#> Acinetobacter_guillouiae 0.3627381
#> Acinetobacter_gyllenbergii 0.7071068
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii 0.3952847
#> Corynebacterium_aurimucosum Corynebacterium_callunae
#> Acinetobacter_beijerinckii 0.1025978 0.2294157
#> Acinetobacter_bouvetii -0.2368421 1.0000000
#> Acinetobacter_guillouiae -0.2631579 -0.3952847
#> Acinetobacter_gyllenbergii -0.5441072 -0.1118034
#> Acinetobacter_indicus 0.1538968 0.4472136
#> Acinetobacter_johnsonii 0.1538968 0.0000000
#> Corynebacterium_casei Corynebacterium_ciconiae
#> Acinetobacter_beijerinckii -0.25 0.0000000
#> Acinetobacter_bouvetii -0.25 0.2236068
#> Acinetobacter_guillouiae 1.00 0.3535534
#> Acinetobacter_gyllenbergii -0.25 0.8944272
#> Acinetobacter_indicus 1.00 -0.5642881
#> Acinetobacter_johnsonii 1.00 -0.4616903
#> Corynebacterium_deserti Corynebacterium_durum
#> Acinetobacter_beijerinckii -0.8660254 0.0000000
#> Acinetobacter_bouvetii 0.1521452 -0.2500000
#> Acinetobacter_guillouiae -0.4082483 -0.2500000
#> Acinetobacter_gyllenbergii -0.4082483 -0.2500000
#> Acinetobacter_indicus 0.6123724 0.3535534
#> Acinetobacter_johnsonii -0.6454972 0.0000000
#> Corynebacterium_efficiens Corynebacterium_falsenii
#> Acinetobacter_beijerinckii -0.5441072 -0.5441072
#> Acinetobacter_bouvetii -0.5441072 0.7905694
#> Acinetobacter_guillouiae -0.5441072 -0.2500000
#> Acinetobacter_gyllenbergii 0.7254763 0.3952847
#> Acinetobacter_indicus 0.2894737 -0.2500000
#> Acinetobacter_johnsonii 0.3441236 -0.2500000
#> Corynebacterium_freneyi Corynebacterium_genitalium
#> Acinetobacter_beijerinckii -0.1118034 0.4103913
#> Acinetobacter_bouvetii -0.7071068 0.3535534
#> Acinetobacter_guillouiae 0.3535534 0.3535534
#> Acinetobacter_gyllenbergii 0.4472136 -0.5000000
#> Acinetobacter_indicus -0.7071068 1.0000000
#> Acinetobacter_johnsonii 0.6708204 -0.1581139
#> Corynebacterium_glutamicum
#> Acinetobacter_beijerinckii 0.64888568
#> Acinetobacter_bouvetii 0.08111071
#> Acinetobacter_guillouiae 0.36273813
#> Acinetobacter_gyllenbergii 0.00000000
#> Acinetobacter_indicus 0.00000000
#> Acinetobacter_johnsonii -0.25000000
#> Corynebacterium_glyciniphilum
#> Acinetobacter_beijerinckii -0.1813691
#> Acinetobacter_bouvetii -0.3535534
#> Acinetobacter_guillouiae -0.7071068
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii -0.2500000
#> Corynebacterium_jeikeium Corynebacterium_lactis
#> Acinetobacter_beijerinckii -0.2500000 0.9746794
#> Acinetobacter_bouvetii -0.3952847 0.9746794
#> Acinetobacter_guillouiae 0.3535534 -0.5441072
#> Acinetobacter_gyllenbergii 0.3952847 0.5000000
#> Acinetobacter_indicus 0.3627381 0.3441236
#> Acinetobacter_johnsonii -0.3952847 0.0000000
#> Corynebacterium_lipophiloflavum
#> Acinetobacter_beijerinckii -0.4000000
#> Acinetobacter_bouvetii -0.2886751
#> Acinetobacter_guillouiae 0.6708204
#> Acinetobacter_gyllenbergii 0.0000000
#> Acinetobacter_indicus -0.2051957
#> Acinetobacter_johnsonii 0.7071068
#> Corynebacterium_maris Corynebacterium_matruchotii
#> Acinetobacter_beijerinckii -0.2500000 -0.7181848
#> Acinetobacter_bouvetii -0.2500000 0.2051957
#> Acinetobacter_guillouiae -0.5441072 -0.2886751
#> Acinetobacter_gyllenbergii -0.2500000 -0.3535534
#> Acinetobacter_indicus -0.5441072 0.3590924
#> Acinetobacter_johnsonii -0.5441072 0.6000000
#> Corynebacterium_nuruki Corynebacterium_otitidis
#> Acinetobacter_beijerinckii 0.3952847 0.6708204
#> Acinetobacter_bouvetii 0.1250000 0.9176629
#> Acinetobacter_guillouiae -0.8603090 0.0000000
#> Acinetobacter_gyllenbergii 0.2236068 -0.3952847
#> Acinetobacter_indicus -0.3952847 0.3354102
#> Acinetobacter_johnsonii -0.6250000 0.3354102
#> Corynebacterium_pseudodiphtheriticum
#> Acinetobacter_beijerinckii 0.3627381
#> Acinetobacter_bouvetii 0.3952847
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii -0.7071068
#> Acinetobacter_indicus 0.7071068
#> Acinetobacter_johnsonii 0.6123724
#> Corynebacterium_pyruviciproducens
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii -0.3952847
#> Acinetobacter_guillouiae 0.3952847
#> Acinetobacter_gyllenbergii -0.3952847
#> Acinetobacter_indicus 0.3952847
#> Acinetobacter_johnsonii 0.3952847
#> Corynebacterium_sphenisci
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii 0.7905694
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii 0.7905694
#> Acinetobacter_indicus -0.5441072
#> Acinetobacter_johnsonii -0.5441072
#> Corynebacterium_terpenotabidum
#> Acinetobacter_beijerinckii 0.3535534
#> Acinetobacter_bouvetii 0.1863390
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii -0.3952847
#> Corynebacterium_timonense
#> Acinetobacter_beijerinckii 0.3535534
#> Acinetobacter_bouvetii 1.0000000
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus 0.7071068
#> Acinetobacter_johnsonii 0.7254763
#> Corynebacterium_tuscaniense
#> Acinetobacter_beijerinckii 1.0000000
#> Acinetobacter_bouvetii 1.0000000
#> Acinetobacter_guillouiae 1.0000000
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus -0.5441072
#> Acinetobacter_johnsonii -0.3952847
#> Corynebacterium_urealyticum
#> Acinetobacter_beijerinckii -0.7894737
#> Acinetobacter_bouvetii 0.0000000
#> Acinetobacter_guillouiae -0.5441072
#> Acinetobacter_gyllenbergii 0.9176629
#> Acinetobacter_indicus 0.0000000
#> Acinetobacter_johnsonii -0.5441072
#> Corynebacterium_variabile Corynebacterium_xerosis
#> Acinetobacter_beijerinckii -0.8603090 -0.28947368
#> Acinetobacter_bouvetii -0.5441072 0.72547625
#> Acinetobacter_guillouiae -0.5441072 0.72547625
#> Acinetobacter_gyllenbergii 0.9176629 0.10259784
#> Acinetobacter_indicus -0.5441072 0.05129892
#> Acinetobacter_johnsonii 0.6882472 0.08111071
#> Cutibacterium_avidum Delftia_acidovorans
#> Acinetobacter_beijerinckii 0.7254763 0.3952847
#> Acinetobacter_bouvetii 0.3627381 1.0000000
#> Acinetobacter_guillouiae -0.5441072 -0.2500000
#> Acinetobacter_gyllenbergii 0.9746794 1.0000000
#> Acinetobacter_indicus 0.0000000 -0.3952847
#> Acinetobacter_johnsonii 1.0000000 -0.2500000
#> Dolosigranulum_pigrum Enterobacter_cloacae
#> Acinetobacter_beijerinckii -0.3535534 -0.8000000
#> Acinetobacter_bouvetii -0.6668859 0.4472136
#> Acinetobacter_guillouiae -0.4000000 -0.8000000
#> Acinetobacter_gyllenbergii 0.0000000 -0.4472136
#> Acinetobacter_indicus -0.6708204 0.7071068
#> Acinetobacter_johnsonii -0.5000000 -0.3535534
#> Enterobacter_hormaechei Escherichia_coli
#> Acinetobacter_beijerinckii 0.7181848 1.0000000
#> Acinetobacter_bouvetii 0.7071068 -0.2500000
#> Acinetobacter_guillouiae -0.3535534 -0.3535534
#> Acinetobacter_gyllenbergii -0.3354102 0.7905694
#> Acinetobacter_indicus 0.4472136 1.0000000
#> Acinetobacter_johnsonii -0.3535534 0.3627381
#> Haemophilus_influenzae Haemophilus_sputorum
#> Acinetobacter_beijerinckii 0.3952847 1.0000000
#> Acinetobacter_bouvetii -0.2500000 0.0000000
#> Acinetobacter_guillouiae -0.2500000 -0.7071068
#> Acinetobacter_gyllenbergii -0.2500000 0.3535534
#> Acinetobacter_indicus 0.0000000 0.4103913
#> Acinetobacter_johnsonii 0.7905694 0.0000000
#> Kocuria_rhizophila Listeria_floridensis
#> Acinetobacter_beijerinckii -0.2500000 1.0000000
#> Acinetobacter_bouvetii -0.2500000 -0.3952847
#> Acinetobacter_guillouiae -0.2500000 -0.7071068
#> Acinetobacter_gyllenbergii 0.3952847 -0.3535534
#> Acinetobacter_indicus -0.2500000 -0.3952847
#> Acinetobacter_johnsonii 1.0000000 -0.2500000
#> Listeria_grayi Listeria_monocytogenes
#> Acinetobacter_beijerinckii 0.7181848 0.3627381
#> Acinetobacter_bouvetii 0.0000000 0.3952847
#> Acinetobacter_guillouiae -0.5441072 0.7071068
#> Acinetobacter_gyllenbergii 0.6668859 -0.3535534
#> Acinetobacter_indicus 0.4103913 -0.2500000
#> Acinetobacter_johnsonii 0.3627381 -0.2500000
#> Moraxella_atlantae Moraxella_caprae
#> Acinetobacter_beijerinckii -0.5441072 0.3952847
#> Acinetobacter_bouvetii -0.3952847 -0.2236068
#> Acinetobacter_guillouiae -0.2500000 0.1118034
#> Acinetobacter_gyllenbergii 0.6123724 0.3354102
#> Acinetobacter_indicus 1.0000000 0.4472136
#> Acinetobacter_johnsonii -0.3952847 0.3952847
#> Moraxella_cuniculi Moraxella_porci
#> Acinetobacter_beijerinckii 0.3952847 1.0000000
#> Acinetobacter_bouvetii -0.2500000 -0.2500000
#> Acinetobacter_guillouiae -0.2500000 0.3535534
#> Acinetobacter_gyllenbergii 1.0000000 1.0000000
#> Acinetobacter_indicus -0.5441072 0.7254763
#> Acinetobacter_johnsonii -0.3952847 0.3952847
#> Mycoplasma_genitalium Mycoplasma_testudinis
#> Acinetobacter_beijerinckii -0.2500000 0.7905694
#> Acinetobacter_bouvetii 0.7254763 1.0000000
#> Acinetobacter_guillouiae 0.2294157 -0.3952847
#> Acinetobacter_gyllenbergii 0.3952847 0.0000000
#> Acinetobacter_indicus -0.3952847 -0.3952847
#> Acinetobacter_johnsonii 0.6708204 -0.2500000
#> Noviherbaspirillum_massiliense Other
#> Acinetobacter_beijerinckii 0.1250000 0.3627381
#> Acinetobacter_bouvetii 0.4472136 0.7254763
#> Acinetobacter_guillouiae 0.4472136 -0.5441072
#> Acinetobacter_gyllenbergii 0.5000000 0.8720816
#> Acinetobacter_indicus 0.7905694 0.0000000
#> Acinetobacter_johnsonii -0.3952847 0.8947368
#> Paracoccus_aminophilus Paracoccus_denitrificans
#> Acinetobacter_beijerinckii -0.3952847 -0.2500000
#> Acinetobacter_bouvetii -0.2500000 -0.5441072
#> Acinetobacter_guillouiae -0.2500000 0.0000000
#> Acinetobacter_gyllenbergii -0.2500000 0.0000000
#> Acinetobacter_indicus -0.3952847 -0.3952847
#> Acinetobacter_johnsonii -0.2500000 0.0000000
#> Pseudomonas_fulva Pseudomonas_indica
#> Acinetobacter_beijerinckii -0.3535534 0.9176629
#> Acinetobacter_bouvetii 0.3952847 0.3952847
#> Acinetobacter_guillouiae -0.3535534 -0.3952847
#> Acinetobacter_gyllenbergii -0.3952847 -0.6250000
#> Acinetobacter_indicus 1.0000000 0.1250000
#> Acinetobacter_johnsonii -0.2500000 -0.3952847
#> Pseudomonas_mendocina Pseudomonas_nitroreducens
#> Acinetobacter_beijerinckii -0.3535534 -0.3354102
#> Acinetobacter_bouvetii 0.7071068 0.3535534
#> Acinetobacter_guillouiae 0.3000000 -0.3535534
#> Acinetobacter_gyllenbergii 0.1118034 -0.3535534
#> Acinetobacter_indicus -0.3535534 -0.3000000
#> Acinetobacter_johnsonii -0.1025978 -0.4472136
#> Pseudomonas_protegens Pseudomonas_putida
#> Acinetobacter_beijerinckii 0.3535534 1.0000000
#> Acinetobacter_bouvetii -0.2500000 -0.2500000
#> Acinetobacter_guillouiae -0.2500000 1.0000000
#> Acinetobacter_gyllenbergii 1.0000000 -0.3952847
#> Acinetobacter_indicus -0.5441072 -0.2500000
#> Acinetobacter_johnsonii -0.2500000 -0.2500000
#> Pseudomonas_resinovorans Pseudomonas_syringae
#> Acinetobacter_beijerinckii 0.7905694 0.7071068
#> Acinetobacter_bouvetii 0.1250000 -0.2500000
#> Acinetobacter_guillouiae -0.2236068 -0.2500000
#> Acinetobacter_gyllenbergii 0.1118034 0.3535534
#> Acinetobacter_indicus 0.1250000 0.0000000
#> Acinetobacter_johnsonii -0.3952847 1.0000000
#> Staphylococcus_aureus Staphylococcus_capitis
#> Acinetobacter_beijerinckii 0.8720816 -0.05735393
#> Acinetobacter_bouvetii 0.7826238 -0.12500000
#> Acinetobacter_guillouiae 0.3000000 -0.39528471
#> Acinetobacter_gyllenbergii -0.3000000 0.32274861
#> Acinetobacter_indicus 0.0000000 0.79056942
#> Acinetobacter_johnsonii -0.7071068 0.12500000
#> Staphylococcus_epidermidis
#> Acinetobacter_beijerinckii 0.36273813
#> Acinetobacter_bouvetii -0.66688593
#> Acinetobacter_guillouiae -0.05129892
#> Acinetobacter_gyllenbergii 0.41039134
#> Acinetobacter_indicus -0.20519567
#> Acinetobacter_johnsonii 0.36273813
#> Staphylococcus_haemolyticus
#> Acinetobacter_beijerinckii -0.1118034
#> Acinetobacter_bouvetii 0.0000000
#> Acinetobacter_guillouiae 0.0000000
#> Acinetobacter_gyllenbergii -0.7071068
#> Acinetobacter_indicus 0.9746794
#> Acinetobacter_johnsonii 0.8944272
#> Staphylococcus_lugdunensis
#> Acinetobacter_beijerinckii 0.3535534
#> Acinetobacter_bouvetii 0.0000000
#> Acinetobacter_guillouiae -0.6000000
#> Acinetobacter_gyllenbergii 0.3535534
#> Acinetobacter_indicus -0.2051957
#> Acinetobacter_johnsonii 0.2236068
#> Staphylococcus_pseudintermedius
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii -0.2867697
#> Acinetobacter_guillouiae -0.1538968
#> Acinetobacter_gyllenbergii 0.7071068
#> Acinetobacter_indicus -0.3535534
#> Acinetobacter_johnsonii -0.5000000
#> Staphylococcus_saprophyticus Staphylococcus_simiae
#> Acinetobacter_beijerinckii -0.6708204 0.1250000
#> Acinetobacter_bouvetii -0.7071068 0.2236068
#> Acinetobacter_guillouiae 0.4472136 -0.4472136
#> Acinetobacter_gyllenbergii 0.2051957 1.0000000
#> Acinetobacter_indicus 0.4472136 0.7905694
#> Acinetobacter_johnsonii -0.3535534 -0.3952847
#> Streptococcus_anginosus Streptococcus_cristatus
#> Acinetobacter_beijerinckii -0.2500000 -0.1118034
#> Acinetobacter_bouvetii 1.0000000 -0.7071068
#> Acinetobacter_guillouiae -0.2500000 0.3535534
#> Acinetobacter_gyllenbergii 0.3535534 -0.7071068
#> Acinetobacter_indicus -0.2500000 -0.1118034
#> Acinetobacter_johnsonii 0.3627381 -0.3535534
#> Streptococcus_gallolyticus Streptococcus_mitis
#> Acinetobacter_beijerinckii -0.2500000 0.3590924
#> Acinetobacter_bouvetii -0.5441072 -0.8603090
#> Acinetobacter_guillouiae 0.3535534 0.3590924
#> Acinetobacter_gyllenbergii 0.3535534 0.2294157
#> Acinetobacter_indicus 0.3952847 -0.5441072
#> Acinetobacter_johnsonii 0.7071068 0.7254763
#> Streptococcus_mutans Streptococcus_parasanguinis
#> Acinetobacter_beijerinckii -0.5441072 0.6123724
#> Acinetobacter_bouvetii -0.2500000 -0.4082483
#> Acinetobacter_guillouiae -0.2500000 -0.8660254
#> Acinetobacter_gyllenbergii 0.3952847 0.3227486
#> Acinetobacter_indicus -0.3952847 0.6123724
#> Acinetobacter_johnsonii -0.2500000 0.2961744
#> Streptococcus_pyogenes Streptococcus_sanguinis
#> Acinetobacter_beijerinckii -0.3952847 0.7000000
#> Acinetobacter_bouvetii -0.2500000 0.7071068
#> Acinetobacter_guillouiae -0.2500000 -0.7071068
#> Acinetobacter_gyllenbergii -0.2500000 0.0000000
#> Acinetobacter_indicus -0.3535534 0.5642881
#> Acinetobacter_johnsonii 0.3952847 0.7071068
#> Streptococcus_sobrinus Streptococcus_suis
#> Acinetobacter_beijerinckii -0.7071068 -0.3952847
#> Acinetobacter_bouvetii 0.0000000 0.5000000
#> Acinetobacter_guillouiae -0.7071068 0.4472136
#> Acinetobacter_gyllenbergii 0.1118034 0.2236068
#> Acinetobacter_indicus -0.3535534 1.0000000
#> Acinetobacter_johnsonii 0.7071068 -0.3952847
#> Streptococcus_thermophilus Weissella_koreensis
#> Acinetobacter_beijerinckii 0.7071068 0.3627381
#> Acinetobacter_bouvetii -0.2500000 0.3952847
#> Acinetobacter_guillouiae -0.2500000 0.7071068
#> Acinetobacter_gyllenbergii 0.3535534 -0.3535534
#> Acinetobacter_indicus 0.0000000 -0.2500000
#> Acinetobacter_johnsonii 1.0000000 -0.2500000
#> Weissella_oryzae Weissella_paramesenteroides
#> Acinetobacter_beijerinckii 0.3590924 -0.3535534
#> Acinetobacter_bouvetii 0.4472136 -0.5000000
#> Acinetobacter_guillouiae 0.0000000 -0.8000000
#> Acinetobacter_gyllenbergii -0.8660254 0.8000000
#> Acinetobacter_indicus -0.3535534 1.0000000
#> Acinetobacter_johnsonii 0.2236068 -0.3535534
#>
#> , , S7
#>
#> Acinetobacter_beijerinckii Acinetobacter_bouvetii
#> Acinetobacter_beijerinckii -0.6250000 -0.2500000
#> Acinetobacter_bouvetii -0.3952847 -0.2500000
#> Acinetobacter_guillouiae -0.3952847 -0.7071068
#> Acinetobacter_gyllenbergii -0.3952847 -0.2500000
#> Acinetobacter_indicus 0.3441236 -0.5441072
#> Acinetobacter_johnsonii 0.5000000 -0.3952847
#> Acinetobacter_guillouiae Acinetobacter_gyllenbergii
#> Acinetobacter_beijerinckii -0.2500000 0.2236068
#> Acinetobacter_bouvetii 0.3627381 0.0000000
#> Acinetobacter_guillouiae -0.5441072 0.7826238
#> Acinetobacter_gyllenbergii -0.2500000 0.8720816
#> Acinetobacter_indicus -0.2500000 0.7826238
#> Acinetobacter_johnsonii -0.7071068 -0.3535534
#> Acinetobacter_indicus Acinetobacter_johnsonii
#> Acinetobacter_beijerinckii -0.3952847 0.7254763
#> Acinetobacter_bouvetii -0.7071068 0.3627381
#> Acinetobacter_guillouiae -0.7071068 -0.5441072
#> Acinetobacter_gyllenbergii 0.3952847 0.9746794
#> Acinetobacter_indicus -0.2500000 0.0000000
#> Acinetobacter_johnsonii -0.2500000 1.0000000
#> Acinetobacter_parvus Acinetobacter_pittii
#> Acinetobacter_beijerinckii -0.2500000 -0.8157895
#> Acinetobacter_bouvetii -0.2500000 0.2294157
#> Acinetobacter_guillouiae -0.2500000 -0.2867697
#> Acinetobacter_gyllenbergii -0.3952847 0.1813691
#> Acinetobacter_indicus -0.3952847 -0.3627381
#> Acinetobacter_johnsonii 0.3952847 -0.3627381
#> Acinetobacter_radioresistens Acinetobacter_towneri
#> Acinetobacter_beijerinckii 0.3354102 0.3952847
#> Acinetobacter_bouvetii -0.2236068 -0.2500000
#> Acinetobacter_guillouiae 0.6308933 -0.2500000
#> Acinetobacter_gyllenbergii 0.5000000 0.3952847
#> Acinetobacter_indicus -0.2236068 -0.3952847
#> Acinetobacter_johnsonii -0.2236068 -0.2500000
#> Acinetobacter_ursingii Aeromonas_hydrophila
#> Acinetobacter_beijerinckii 0.9746794 0.1813691
#> Acinetobacter_bouvetii 0.0000000 0.2867697
#> Acinetobacter_guillouiae 0.7071068 -0.2867697
#> Acinetobacter_gyllenbergii 0.7071068 -0.7631579
#> Acinetobacter_indicus 0.3535534 -0.3627381
#> Acinetobacter_johnsonii -0.3535534 0.7254763
#> Aeromonas_salmonicida Alkalihalophilus_pseudofirmus
#> Acinetobacter_beijerinckii 0.3952847 0.8720816
#> Acinetobacter_bouvetii 0.3952847 -0.7071068
#> Acinetobacter_guillouiae 0.3952847 -0.2236068
#> Acinetobacter_gyllenbergii -0.1118034 0.7071068
#> Acinetobacter_indicus 0.4588315 -0.8000000
#> Acinetobacter_johnsonii -0.6250000 0.1000000
#> Brucella_anthropi Brucella_melitensis
#> Acinetobacter_beijerinckii 0.2051957 0.7071068
#> Acinetobacter_bouvetii -0.2051957 0.0000000
#> Acinetobacter_guillouiae -0.5441072 -0.2500000
#> Acinetobacter_gyllenbergii 0.3627381 -0.3952847
#> Acinetobacter_indicus 0.3441236 0.3627381
#> Acinetobacter_johnsonii 0.3627381 -0.2500000
#> Corynebacterium_accolens
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii 1.0000000
#> Acinetobacter_guillouiae -0.7071068
#> Acinetobacter_gyllenbergii -0.5441072
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii -0.3952847
#> Corynebacterium_ammoniagenes
#> Acinetobacter_beijerinckii -0.8000000
#> Acinetobacter_bouvetii 0.7826238
#> Acinetobacter_guillouiae -0.2051957
#> Acinetobacter_gyllenbergii -0.1538968
#> Acinetobacter_indicus 0.3535534
#> Acinetobacter_johnsonii 0.3535534
#> Corynebacterium_appendicis
#> Acinetobacter_beijerinckii -0.5441072
#> Acinetobacter_bouvetii 0.9176629
#> Acinetobacter_guillouiae 0.7905694
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus -0.3627381
#> Acinetobacter_johnsonii 1.0000000
#> Corynebacterium_argentoratense
#> Acinetobacter_beijerinckii 0.1250000
#> Acinetobacter_bouvetii -0.6250000
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii 0.2236068
#> Acinetobacter_indicus 0.3354102
#> Acinetobacter_johnsonii 0.1118034
#> Corynebacterium_aurimucosum Corynebacterium_callunae
#> Acinetobacter_beijerinckii 0.7905694 0.7071068
#> Acinetobacter_bouvetii 0.7905694 0.7071068
#> Acinetobacter_guillouiae -0.3952847 -0.5441072
#> Acinetobacter_gyllenbergii 0.0000000 -0.2500000
#> Acinetobacter_indicus 0.3354102 -0.3952847
#> Acinetobacter_johnsonii 0.2236068 -0.2500000
#> Corynebacterium_casei Corynebacterium_ciconiae
#> Acinetobacter_beijerinckii -0.3952847 -0.2500000
#> Acinetobacter_bouvetii -0.2500000 -0.2500000
#> Acinetobacter_guillouiae 1.0000000 0.7071068
#> Acinetobacter_gyllenbergii -0.5441072 -0.2500000
#> Acinetobacter_indicus -0.3535534 -0.2500000
#> Acinetobacter_johnsonii 0.3952847 0.7905694
#> Corynebacterium_deserti Corynebacterium_durum
#> Acinetobacter_beijerinckii -0.3952847 0.0000000
#> Acinetobacter_bouvetii 0.3952847 0.1250000
#> Acinetobacter_guillouiae 0.7905694 0.8750000
#> Acinetobacter_gyllenbergii 0.1250000 0.3952847
#> Acinetobacter_indicus 1.0000000 -0.3952847
#> Acinetobacter_johnsonii 0.1250000 -0.3952847
#> Corynebacterium_efficiens Corynebacterium_falsenii
#> Acinetobacter_beijerinckii 0.6000000 -0.1118034
#> Acinetobacter_bouvetii -0.3000000 0.0000000
#> Acinetobacter_guillouiae 0.8720816 0.0000000
#> Acinetobacter_gyllenbergii 0.2236068 -0.4472136
#> Acinetobacter_indicus -0.9000000 0.3354102
#> Acinetobacter_johnsonii -0.9000000 0.0000000
#> Corynebacterium_freneyi Corynebacterium_genitalium
#> Acinetobacter_beijerinckii -0.1025978 1.0000000
#> Acinetobacter_bouvetii 0.0000000 0.3952847
#> Acinetobacter_guillouiae -0.3535534 0.7905694
#> Acinetobacter_gyllenbergii -0.3535534 -0.5441072
#> Acinetobacter_indicus 0.3535534 -0.2500000
#> Acinetobacter_johnsonii 0.7071068 -0.2500000
#> Corynebacterium_glutamicum
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii -0.3952847
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii 0.7826238
#> Acinetobacter_indicus -0.3441236
#> Acinetobacter_johnsonii 0.1250000
#> Corynebacterium_glyciniphilum
#> Acinetobacter_beijerinckii -0.3627381
#> Acinetobacter_bouvetii 1.0000000
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus 0.7071068
#> Acinetobacter_johnsonii 0.3535534
#> Corynebacterium_jeikeium Corynebacterium_lactis
#> Acinetobacter_beijerinckii -0.4472136 0.8944272
#> Acinetobacter_bouvetii 0.1118034 0.4472136
#> Acinetobacter_guillouiae 0.3952847 -0.3952847
#> Acinetobacter_gyllenbergii 0.7905694 -0.6250000
#> Acinetobacter_indicus -0.1250000 0.8029551
#> Acinetobacter_johnsonii 0.7905694 -0.3952847
#> Corynebacterium_lipophiloflavum
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii -0.2500000
#> Acinetobacter_guillouiae 0.7071068
#> Acinetobacter_gyllenbergii 0.0000000
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii -0.3952847
#> Corynebacterium_maris Corynebacterium_matruchotii
#> Acinetobacter_beijerinckii -0.1538968 0.7071068
#> Acinetobacter_bouvetii 0.3441236 -0.6708204
#> Acinetobacter_guillouiae -0.5263158 0.5000000
#> Acinetobacter_gyllenbergii 0.7631579 -0.3952847
#> Acinetobacter_indicus 0.7254763 -0.8029551
#> Acinetobacter_johnsonii 0.7254763 0.7905694
#> Corynebacterium_nuruki Corynebacterium_otitidis
#> Acinetobacter_beijerinckii -0.51618540 0.7254763
#> Acinetobacter_bouvetii 0.22941573 0.7254763
#> Acinetobacter_guillouiae 0.00000000 -0.5441072
#> Acinetobacter_gyllenbergii 0.05129892 -0.2631579
#> Acinetobacter_indicus 0.41039134 0.6668859
#> Acinetobacter_johnsonii -0.15389675 0.2051957
#> Corynebacterium_pseudodiphtheriticum
#> Acinetobacter_beijerinckii -0.7071068
#> Acinetobacter_bouvetii -0.7071068
#> Acinetobacter_guillouiae 0.3627381
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus 0.7905694
#> Acinetobacter_johnsonii -0.2500000
#> Corynebacterium_pyruviciproducens
#> Acinetobacter_beijerinckii 0.3952847
#> Acinetobacter_bouvetii 1.0000000
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii 0.7254763
#> Acinetobacter_indicus -0.7071068
#> Acinetobacter_johnsonii 0.7905694
#> Corynebacterium_sphenisci
#> Acinetobacter_beijerinckii 0.3535534
#> Acinetobacter_bouvetii 0.7071068
#> Acinetobacter_guillouiae -0.9000000
#> Acinetobacter_gyllenbergii 0.3535534
#> Acinetobacter_indicus 0.7071068
#> Acinetobacter_johnsonii -0.4472136
#> Corynebacterium_terpenotabidum
#> Acinetobacter_beijerinckii 0.7905694
#> Acinetobacter_bouvetii 0.3952847
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii -0.6250000
#> Acinetobacter_indicus -0.1250000
#> Acinetobacter_johnsonii 0.1250000
#> Corynebacterium_timonense
#> Acinetobacter_beijerinckii -0.2867697
#> Acinetobacter_bouvetii -0.1250000
#> Acinetobacter_guillouiae 1.0000000
#> Acinetobacter_gyllenbergii 0.7905694
#> Acinetobacter_indicus -0.3952847
#> Acinetobacter_johnsonii -0.3952847
#> Corynebacterium_tuscaniense
#> Acinetobacter_beijerinckii 0.7071068
#> Acinetobacter_bouvetii 0.3535534
#> Acinetobacter_guillouiae 0.1813691
#> Acinetobacter_gyllenbergii 0.3952847
#> Acinetobacter_indicus -0.7071068
#> Acinetobacter_johnsonii -0.7071068
#> Corynebacterium_urealyticum
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii 1.0000000
#> Acinetobacter_guillouiae 1.0000000
#> Acinetobacter_gyllenbergii 0.7905694
#> Acinetobacter_indicus 0.3952847
#> Acinetobacter_johnsonii 1.0000000
#> Corynebacterium_variabile Corynebacterium_xerosis
#> Acinetobacter_beijerinckii 0.00 0.3535534
#> Acinetobacter_bouvetii 1.00 0.8944272
#> Acinetobacter_guillouiae -0.25 0.3354102
#> Acinetobacter_gyllenbergii -0.25 0.2051957
#> Acinetobacter_indicus -0.25 -0.7071068
#> Acinetobacter_johnsonii -0.25 -0.3535534
#> Cutibacterium_avidum Delftia_acidovorans
#> Acinetobacter_beijerinckii 0.7071068 -0.2294157
#> Acinetobacter_bouvetii 0.7071068 -0.3952847
#> Acinetobacter_guillouiae 0.7071068 0.1250000
#> Acinetobacter_gyllenbergii -0.7000000 0.3952847
#> Acinetobacter_indicus 0.9746794 -0.2236068
#> Acinetobacter_johnsonii -0.1118034 0.1118034
#> Dolosigranulum_pigrum Enterobacter_cloacae
#> Acinetobacter_beijerinckii 0.5642881 -0.3535534
#> Acinetobacter_bouvetii -0.1025978 0.3535534
#> Acinetobacter_guillouiae -0.5441072 -0.2500000
#> Acinetobacter_gyllenbergii 0.7254763 0.7905694
#> Acinetobacter_indicus 0.0000000 0.0000000
#> Acinetobacter_johnsonii 0.7254763 1.0000000
#> Enterobacter_hormaechei Escherichia_coli
#> Acinetobacter_beijerinckii 0.7905694 0.0000000
#> Acinetobacter_bouvetii -0.2500000 -0.3952847
#> Acinetobacter_guillouiae 0.3535534 0.7254763
#> Acinetobacter_gyllenbergii 0.7254763 0.0000000
#> Acinetobacter_indicus 1.0000000 -0.2500000
#> Acinetobacter_johnsonii 0.3952847 -0.2500000
#> Haemophilus_influenzae Haemophilus_sputorum
#> Acinetobacter_beijerinckii 1.0000000 -0.3952847
#> Acinetobacter_bouvetii -0.3952847 -0.3952847
#> Acinetobacter_guillouiae 0.6708204 -0.2500000
#> Acinetobacter_gyllenbergii -0.3535534 0.0000000
#> Acinetobacter_indicus -0.8720816 0.3535534
#> Acinetobacter_johnsonii 0.7071068 0.3535534
#> Kocuria_rhizophila Listeria_floridensis
#> Acinetobacter_beijerinckii -0.2500000 0.3627381
#> Acinetobacter_bouvetii -0.2500000 -0.1538968
#> Acinetobacter_guillouiae -0.2500000 -0.5642881
#> Acinetobacter_gyllenbergii 0.7254763 0.3627381
#> Acinetobacter_indicus -0.7071068 -0.3947368
#> Acinetobacter_johnsonii -0.3535534 0.3627381
#> Listeria_grayi Listeria_monocytogenes
#> Acinetobacter_beijerinckii -0.2500000 -0.5441072
#> Acinetobacter_bouvetii 0.0000000 -0.2500000
#> Acinetobacter_guillouiae -0.3952847 -0.1813691
#> Acinetobacter_gyllenbergii -0.2500000 1.0000000
#> Acinetobacter_indicus 0.3535534 -0.2500000
#> Acinetobacter_johnsonii -0.3952847 -0.2500000
#> Moraxella_atlantae Moraxella_caprae
#> Acinetobacter_beijerinckii 0.0000000 0.7071068
#> Acinetobacter_bouvetii 1.0000000 -0.2500000
#> Acinetobacter_guillouiae -0.3952847 -0.2500000
#> Acinetobacter_gyllenbergii 0.0000000 0.3952847
#> Acinetobacter_indicus -0.2500000 -0.2500000
#> Acinetobacter_johnsonii -0.2500000 -0.2500000
#> Moraxella_cuniculi Moraxella_porci
#> Acinetobacter_beijerinckii 0.0000000 -0.5441072
#> Acinetobacter_bouvetii 0.3354102 -0.5441072
#> Acinetobacter_guillouiae 0.3535534 -0.2631579
#> Acinetobacter_gyllenbergii 0.1118034 0.4103913
#> Acinetobacter_indicus 0.4472136 0.7254763
#> Acinetobacter_johnsonii 0.3535534 -0.5441072
#> Mycoplasma_genitalium Mycoplasma_testudinis
#> Acinetobacter_beijerinckii 1.0000000 0.00000000
#> Acinetobacter_bouvetii 0.3535534 -0.05129892
#> Acinetobacter_guillouiae 0.0000000 -0.11180340
#> Acinetobacter_gyllenbergii 1.0000000 -0.35355339
#> Acinetobacter_indicus 0.0000000 0.60000000
#> Acinetobacter_johnsonii 1.0000000 -0.67082039
#> Noviherbaspirillum_massiliense Other
#> Acinetobacter_beijerinckii 0.3627381 -0.02631579
#> Acinetobacter_bouvetii -0.2500000 0.00000000
#> Acinetobacter_guillouiae -0.1813691 -0.28676967
#> Acinetobacter_gyllenbergii -0.2500000 -0.94736842
#> Acinetobacter_indicus 1.0000000 0.36273813
#> Acinetobacter_johnsonii -0.2500000 -0.54410719
#> Paracoccus_aminophilus Paracoccus_denitrificans
#> Acinetobacter_beijerinckii -0.3535534 -0.2500000
#> Acinetobacter_bouvetii -0.2500000 -0.3952847
#> Acinetobacter_guillouiae -0.2500000 -0.2500000
#> Acinetobacter_gyllenbergii -0.3952847 -0.3952847
#> Acinetobacter_indicus 1.0000000 -0.3952847
#> Acinetobacter_johnsonii -0.2500000 -0.2500000
#> Pseudomonas_fulva Pseudomonas_indica
#> Acinetobacter_beijerinckii 1.0000000 1.0000000
#> Acinetobacter_bouvetii 1.0000000 0.3535534
#> Acinetobacter_guillouiae 0.7254763 0.0000000
#> Acinetobacter_gyllenbergii 0.3535534 1.0000000
#> Acinetobacter_indicus -0.2500000 0.0000000
#> Acinetobacter_johnsonii 1.0000000 1.0000000
#> Pseudomonas_mendocina Pseudomonas_nitroreducens
#> Acinetobacter_beijerinckii -0.3952847 -0.5161854
#> Acinetobacter_bouvetii 0.8603090 0.3952847
#> Acinetobacter_guillouiae 0.8750000 0.2867697
#> Acinetobacter_gyllenbergii -0.3952847 0.7905694
#> Acinetobacter_indicus -0.3354102 -0.3952847
#> Acinetobacter_johnsonii 0.5000000 -0.3952847
#> Pseudomonas_protegens Pseudomonas_putida
#> Acinetobacter_beijerinckii 0.4588315 0.3535534
#> Acinetobacter_bouvetii 0.7905694 1.0000000
#> Acinetobacter_guillouiae -0.1250000 1.0000000
#> Acinetobacter_gyllenbergii -0.3441236 -0.3952847
#> Acinetobacter_indicus 0.3952847 -0.2500000
#> Acinetobacter_johnsonii -0.3952847 1.0000000
#> Pseudomonas_resinovorans Pseudomonas_syringae
#> Acinetobacter_beijerinckii -0.7254763 0.7254763
#> Acinetobacter_bouvetii 0.2294157 0.7254763
#> Acinetobacter_guillouiae 0.7254763 0.8947368
#> Acinetobacter_gyllenbergii -0.2867697 0.4103913
#> Acinetobacter_indicus -0.8029551 0.0000000
#> Acinetobacter_johnsonii 0.7254763 0.7254763
#> Staphylococcus_aureus Staphylococcus_capitis
#> Acinetobacter_beijerinckii 0.00000000 -0.2500000
#> Acinetobacter_bouvetii 0.61558701 0.5441072
#> Acinetobacter_guillouiae 0.10259784 0.7905694
#> Acinetobacter_gyllenbergii 0.00000000 -0.2500000
#> Acinetobacter_indicus -0.02631579 0.0000000
#> Acinetobacter_johnsonii 0.00000000 -0.3952847
#> Staphylococcus_epidermidis
#> Acinetobacter_beijerinckii 0.5000000
#> Acinetobacter_bouvetii -0.5441072
#> Acinetobacter_guillouiae -0.9473684
#> Acinetobacter_gyllenbergii 0.3627381
#> Acinetobacter_indicus 0.0000000
#> Acinetobacter_johnsonii -0.5441072
#> Staphylococcus_haemolyticus
#> Acinetobacter_beijerinckii 0.7254763
#> Acinetobacter_bouvetii -0.2500000
#> Acinetobacter_guillouiae 0.3952847
#> Acinetobacter_gyllenbergii -0.5441072
#> Acinetobacter_indicus 1.0000000
#> Acinetobacter_johnsonii -0.2500000
#> Staphylococcus_lugdunensis
#> Acinetobacter_beijerinckii 0.0000000
#> Acinetobacter_bouvetii -0.2500000
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii 0.7905694
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii -0.2500000
#> Staphylococcus_pseudintermedius
#> Acinetobacter_beijerinckii -0.7071068
#> Acinetobacter_bouvetii -0.4472136
#> Acinetobacter_guillouiae 0.0000000
#> Acinetobacter_gyllenbergii -0.1118034
#> Acinetobacter_indicus -0.4472136
#> Acinetobacter_johnsonii 0.0000000
#> Staphylococcus_saprophyticus Staphylococcus_simiae
#> Acinetobacter_beijerinckii 0.7905694 -0.2500000
#> Acinetobacter_bouvetii 0.7905694 0.0000000
#> Acinetobacter_guillouiae 0.9176629 0.7071068
#> Acinetobacter_gyllenbergii 0.7826238 -0.2500000
#> Acinetobacter_indicus 0.3952847 0.7254763
#> Acinetobacter_johnsonii 0.7905694 -0.2500000
#> Streptococcus_anginosus Streptococcus_cristatus
#> Acinetobacter_beijerinckii -0.72547625 -0.5441072
#> Acinetobacter_bouvetii 1.00000000 -0.2500000
#> Acinetobacter_guillouiae 0.86030900 -0.1813691
#> Acinetobacter_gyllenbergii -0.36273813 1.0000000
#> Acinetobacter_indicus -0.35909242 -0.2500000
#> Acinetobacter_johnsonii 0.05735393 -0.2500000
#> Streptococcus_gallolyticus Streptococcus_mitis
#> Acinetobacter_beijerinckii -0.1538968 0.7826238
#> Acinetobacter_bouvetii 0.0000000 0.7905694
#> Acinetobacter_guillouiae -0.1118034 0.7905694
#> Acinetobacter_gyllenbergii -0.8720816 -0.1250000
#> Acinetobacter_indicus 0.3535534 -0.3952847
#> Acinetobacter_johnsonii -0.7071068 0.7905694
#> Streptococcus_mutans Streptococcus_parasanguinis
#> Acinetobacter_beijerinckii -0.2500000 -0.2500000
#> Acinetobacter_bouvetii -0.3952847 -0.2500000
#> Acinetobacter_guillouiae -0.2500000 0.3627381
#> Acinetobacter_gyllenbergii 0.7905694 0.7071068
#> Acinetobacter_indicus -0.3952847 1.0000000
#> Acinetobacter_johnsonii -0.2500000 -0.2500000
#> Streptococcus_pyogenes Streptococcus_sanguinis
#> Acinetobacter_beijerinckii -0.2500000 -0.2500000
#> Acinetobacter_bouvetii -0.7071068 0.5441072
#> Acinetobacter_guillouiae -0.7071068 0.3952847
#> Acinetobacter_gyllenbergii -0.2500000 -0.2500000
#> Acinetobacter_indicus -0.5441072 -0.3535534
#> Acinetobacter_johnsonii -0.2500000 0.7905694
#> Streptococcus_sobrinus Streptococcus_suis
#> Acinetobacter_beijerinckii 0.7181848 0.0000000
#> Acinetobacter_bouvetii -0.3535534 1.0000000
#> Acinetobacter_guillouiae -0.4103913 -0.3952847
#> Acinetobacter_gyllenbergii -0.7071068 0.0000000
#> Acinetobacter_indicus 0.7071068 -0.2500000
#> Acinetobacter_johnsonii 0.0000000 -0.2500000
#> Streptococcus_thermophilus Weissella_koreensis
#> Acinetobacter_beijerinckii 0.3535534 0.0000000
#> Acinetobacter_bouvetii 1.0000000 0.6882472
#> Acinetobacter_guillouiae 1.0000000 0.7254763
#> Acinetobacter_gyllenbergii -0.3952847 -0.2867697
#> Acinetobacter_indicus -0.2500000 0.2294157
#> Acinetobacter_johnsonii 1.0000000 0.7254763
#> Weissella_oryzae Weissella_paramesenteroides
#> Acinetobacter_beijerinckii -0.3535534 -0.35355339
#> Acinetobacter_bouvetii -0.3535534 -0.70000000
#> Acinetobacter_guillouiae 0.2051957 0.00000000
#> Acinetobacter_gyllenbergii 0.3000000 -0.35355339
#> Acinetobacter_indicus 0.3535534 0.05129892
#> Acinetobacter_johnsonii -0.3535534 -0.35355339
#>
#> , , S8
#>
#> Acinetobacter_beijerinckii Acinetobacter_bouvetii
#> Acinetobacter_beijerinckii -0.2500000 -0.86030900
#> Acinetobacter_bouvetii 0.5441072 -0.39528471
#> Acinetobacter_guillouiae 0.3952847 0.05735393
#> Acinetobacter_gyllenbergii -0.2500000 0.79056942
#> Acinetobacter_indicus -0.3535534 -0.39528471
#> Acinetobacter_johnsonii 0.7905694 0.39528471
#> Acinetobacter_guillouiae Acinetobacter_gyllenbergii
#> Acinetobacter_beijerinckii 0.0000000 0.3535534
#> Acinetobacter_bouvetii 1.0000000 1.0000000
#> Acinetobacter_guillouiae -0.3952847 1.0000000
#> Acinetobacter_gyllenbergii 0.0000000 -0.3952847
#> Acinetobacter_indicus -0.2500000 -0.2500000
#> Acinetobacter_johnsonii -0.2500000 1.0000000
#> Acinetobacter_indicus Acinetobacter_johnsonii
#> Acinetobacter_beijerinckii 0.3952847 -0.2500000
#> Acinetobacter_bouvetii -0.1250000 -0.2500000
#> Acinetobacter_guillouiae -0.3952847 0.0000000
#> Acinetobacter_gyllenbergii -0.6250000 -0.3535534
#> Acinetobacter_indicus 0.1250000 -0.2500000
#> Acinetobacter_johnsonii -0.3952847 -0.2500000
#> Acinetobacter_parvus Acinetobacter_pittii
#> Acinetobacter_beijerinckii 0.7071068 0.0000000
#> Acinetobacter_bouvetii -0.9000000 0.3952847
#> Acinetobacter_guillouiae 0.5000000 0.3535534
#> Acinetobacter_gyllenbergii 0.2236068 -0.2500000
#> Acinetobacter_indicus -0.3535534 0.7254763
#> Acinetobacter_johnsonii 0.0000000 -0.3952847
#> Acinetobacter_radioresistens Acinetobacter_towneri
#> Acinetobacter_beijerinckii -0.89442719 0.3627381
#> Acinetobacter_bouvetii -0.44721360 -0.7254763
#> Acinetobacter_guillouiae -0.05892557 -0.7105263
#> Acinetobacter_gyllenbergii 0.39528471 -0.4588315
#> Acinetobacter_indicus -0.51618540 0.7254763
#> Acinetobacter_johnsonii 0.12500000 -0.6668859
#> Acinetobacter_ursingii Aeromonas_hydrophila
#> Acinetobacter_beijerinckii 0.7453560 0.4472136
#> Acinetobacter_bouvetii 0.6488857 0.3000000
#> Acinetobacter_guillouiae 0.1863390 0.3535534
#> Acinetobacter_gyllenbergii 0.1863390 0.7826238
#> Acinetobacter_indicus 0.2946278 0.4472136
#> Acinetobacter_johnsonii -0.4124790 -0.4616903
#> Aeromonas_salmonicida Alkalihalophilus_pseudofirmus
#> Acinetobacter_beijerinckii 0.44721360 -0.5000000
#> Acinetobacter_bouvetii 0.30779351 0.4472136
#> Acinetobacter_guillouiae -0.30000000 -0.3952847
#> Acinetobacter_gyllenbergii 0.22360680 -0.6250000
#> Acinetobacter_indicus 0.05129892 0.2294157
#> Acinetobacter_johnsonii -0.30000000 -0.3952847
#> Brucella_anthropi Brucella_melitensis
#> Acinetobacter_beijerinckii 0.3952847 0.66688593
#> Acinetobacter_bouvetii -0.5441072 -0.44721360
#> Acinetobacter_guillouiae 0.7254763 -0.05129892
#> Acinetobacter_gyllenbergii -0.2500000 0.40000000
#> Acinetobacter_indicus -0.2500000 -0.22360680
#> Acinetobacter_johnsonii 0.3535534 0.22360680
#> Corynebacterium_accolens
#> Acinetobacter_beijerinckii 0.2000000
#> Acinetobacter_bouvetii 0.7071068
#> Acinetobacter_guillouiae -0.7071068
#> Acinetobacter_gyllenbergii -0.7000000
#> Acinetobacter_indicus 0.0000000
#> Acinetobacter_johnsonii -0.1118034
#> Corynebacterium_ammoniagenes
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii -0.5590170
#> Acinetobacter_guillouiae 0.0000000
#> Acinetobacter_gyllenbergii -0.3535534
#> Acinetobacter_indicus 0.3535534
#> Acinetobacter_johnsonii -0.3952847
#> Corynebacterium_appendicis
#> Acinetobacter_beijerinckii -0.7071068
#> Acinetobacter_bouvetii 1.0000000
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii 1.0000000
#> Acinetobacter_indicus -0.3952847
#> Acinetobacter_johnsonii -0.3952847
#> Corynebacterium_argentoratense
#> Acinetobacter_beijerinckii 0.8029551
#> Acinetobacter_bouvetii -0.2051957
#> Acinetobacter_guillouiae 0.2294157
#> Acinetobacter_gyllenbergii 0.0000000
#> Acinetobacter_indicus 0.0000000
#> Acinetobacter_johnsonii 0.0000000
#> Corynebacterium_aurimucosum Corynebacterium_callunae
#> Acinetobacter_beijerinckii -0.3952847 -0.1250000
#> Acinetobacter_bouvetii 0.3952847 0.3952847
#> Acinetobacter_guillouiae 1.0000000 0.2236068
#> Acinetobacter_gyllenbergii 1.0000000 -0.3354102
#> Acinetobacter_indicus -0.2500000 0.8750000
#> Acinetobacter_johnsonii -0.2500000 -0.3952847
#> Corynebacterium_casei Corynebacterium_ciconiae
#> Acinetobacter_beijerinckii 0.1250000 -0.34412360
#> Acinetobacter_bouvetii 0.4472136 -0.30779351
#> Acinetobacter_guillouiae 0.1250000 -0.71818485
#> Acinetobacter_gyllenbergii 0.2236068 0.10814761
#> Acinetobacter_indicus -0.3952847 0.00000000
#> Acinetobacter_johnsonii 0.0000000 -0.02631579
#> Corynebacterium_deserti Corynebacterium_durum
#> Acinetobacter_beijerinckii 0.0000000 -0.2500000
#> Acinetobacter_bouvetii 0.0000000 -0.2500000
#> Acinetobacter_guillouiae 0.7254763 -0.5441072
#> Acinetobacter_gyllenbergii 0.3421053 -0.2500000
#> Acinetobacter_indicus 0.6882472 -0.2500000
#> Acinetobacter_johnsonii -0.5441072 -0.3952847
#> Corynebacterium_efficiens Corynebacterium_falsenii
#> Acinetobacter_beijerinckii 0.3590924 0.3627381
#> Acinetobacter_bouvetii -0.1118034 -0.3952847
#> Acinetobacter_guillouiae -0.6000000 -0.5441072
#> Acinetobacter_gyllenbergii -0.3535534 0.7071068
#> Acinetobacter_indicus -0.1118034 -0.3952847
#> Acinetobacter_johnsonii 0.2236068 -0.5441072
#> Corynebacterium_freneyi Corynebacterium_genitalium
#> Acinetobacter_beijerinckii -0.2500000 -0.6250000
#> Acinetobacter_bouvetii -0.3535534 0.1250000
#> Acinetobacter_guillouiae 0.0000000 0.0000000
#> Acinetobacter_gyllenbergii -0.2500000 0.0000000
#> Acinetobacter_indicus -0.3952847 0.3952847
#> Acinetobacter_johnsonii 0.7254763 0.3952847
#> Corynebacterium_glutamicum
#> Acinetobacter_beijerinckii 0.8750000
#> Acinetobacter_bouvetii -0.5161854
#> Acinetobacter_guillouiae 0.1250000
#> Acinetobacter_gyllenbergii 0.6882472
#> Acinetobacter_indicus -0.7826238
#> Acinetobacter_johnsonii 0.5000000
#> Corynebacterium_glyciniphilum
#> Acinetobacter_beijerinckii -0.4103913
#> Acinetobacter_bouvetii -0.5000000
#> Acinetobacter_guillouiae 0.3535534
#> Acinetobacter_gyllenbergii 0.0000000
#> Acinetobacter_indicus -0.1000000
#> Acinetobacter_johnsonii -0.3535534
#> Corynebacterium_jeikeium Corynebacterium_lactis
#> Acinetobacter_beijerinckii 0.1538968 -0.2500000
#> Acinetobacter_bouvetii -0.3535534 -0.7071068
#> Acinetobacter_guillouiae -0.6324555 1.0000000
#> Acinetobacter_gyllenbergii -0.9000000 -0.2500000
#> Acinetobacter_indicus 0.1000000 1.0000000
#> Acinetobacter_johnsonii 0.1000000 -0.3952847
#> Corynebacterium_lipophiloflavum
#> Acinetobacter_beijerinckii -0.5161854
#> Acinetobacter_bouvetii -0.3441236
#> Acinetobacter_guillouiae 0.2051957
#> Acinetobacter_gyllenbergii -0.5161854
#> Acinetobacter_indicus -0.5441072
#> Acinetobacter_johnsonii -0.5441072
#> Corynebacterium_maris Corynebacterium_matruchotii
#> Acinetobacter_beijerinckii 0.7905694 -0.7071068
#> Acinetobacter_bouvetii -0.6250000 -0.3952847
#> Acinetobacter_guillouiae 0.1250000 -0.2500000
#> Acinetobacter_gyllenbergii 0.7905694 0.7071068
#> Acinetobacter_indicus 0.7905694 -0.3535534
#> Acinetobacter_johnsonii -0.3952847 0.3952847
#> Corynebacterium_nuruki Corynebacterium_otitidis
#> Acinetobacter_beijerinckii -0.6250000 -0.3952847
#> Acinetobacter_bouvetii 0.1250000 -0.6250000
#> Acinetobacter_guillouiae -0.8944272 -0.6708204
#> Acinetobacter_gyllenbergii 0.1250000 -0.6708204
#> Acinetobacter_indicus -0.7826238 -0.8838835
#> Acinetobacter_johnsonii -0.3952847 -0.3952847
#> Corynebacterium_pseudodiphtheriticum
#> Acinetobacter_beijerinckii 0.3627381
#> Acinetobacter_bouvetii 0.3627381
#> Acinetobacter_guillouiae 0.3627381
#> Acinetobacter_gyllenbergii -0.5441072
#> Acinetobacter_indicus 0.1315789
#> Acinetobacter_johnsonii -0.2867697
#> Corynebacterium_pyruviciproducens
#> Acinetobacter_beijerinckii 0.9176629
#> Acinetobacter_bouvetii 0.0000000
#> Acinetobacter_guillouiae -0.5441072
#> Acinetobacter_gyllenbergii 0.7631579
#> Acinetobacter_indicus 0.7254763
#> Acinetobacter_johnsonii 0.7254763
#> Corynebacterium_sphenisci
#> Acinetobacter_beijerinckii 0.0000000
#> Acinetobacter_bouvetii -0.1538968
#> Acinetobacter_guillouiae -0.3354102
#> Acinetobacter_gyllenbergii -0.5000000
#> Acinetobacter_indicus 0.7071068
#> Acinetobacter_johnsonii 0.4472136
#> Corynebacterium_terpenotabidum
#> Acinetobacter_beijerinckii 0.3952847
#> Acinetobacter_bouvetii 0.6882472
#> Acinetobacter_guillouiae -0.6250000
#> Acinetobacter_gyllenbergii -0.3441236
#> Acinetobacter_indicus -0.7826238
#> Acinetobacter_johnsonii 0.8750000
#> Corynebacterium_timonense
#> Acinetobacter_beijerinckii 0.8750000
#> Acinetobacter_bouvetii -0.3952847
#> Acinetobacter_guillouiae 0.7826238
#> Acinetobacter_gyllenbergii -0.6000000
#> Acinetobacter_indicus -0.3535534
#> Acinetobacter_johnsonii 0.1118034
#> Corynebacterium_tuscaniense
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii 0.1250000
#> Acinetobacter_guillouiae -0.6250000
#> Acinetobacter_gyllenbergii 0.6882472
#> Acinetobacter_indicus -0.5161854
#> Acinetobacter_johnsonii -0.3952847
#> Corynebacterium_urealyticum
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii -0.3952847
#> Acinetobacter_guillouiae -0.5441072
#> Acinetobacter_gyllenbergii -0.3952847
#> Acinetobacter_indicus -0.5441072
#> Acinetobacter_johnsonii 0.0000000
#> Corynebacterium_variabile Corynebacterium_xerosis
#> Acinetobacter_beijerinckii -0.3952847 -0.8944272
#> Acinetobacter_bouvetii -0.5441072 0.1025978
#> Acinetobacter_guillouiae 0.3535534 -0.3535534
#> Acinetobacter_gyllenbergii 1.0000000 0.1581139
#> Acinetobacter_indicus -0.2500000 -0.6000000
#> Acinetobacter_johnsonii -0.7071068 0.4000000
#> Cutibacterium_avidum Delftia_acidovorans
#> Acinetobacter_beijerinckii 0.7071068 0.94868330
#> Acinetobacter_bouvetii 0.7071068 -0.05892557
#> Acinetobacter_guillouiae 0.5000000 0.35355339
#> Acinetobacter_gyllenbergii -0.3535534 0.94868330
#> Acinetobacter_indicus 0.7071068 0.64818122
#> Acinetobacter_johnsonii -0.3535534 0.18633900
#> Dolosigranulum_pigrum Enterobacter_cloacae
#> Acinetobacter_beijerinckii -0.3535534 0.4472136
#> Acinetobacter_bouvetii -0.2500000 -0.1118034
#> Acinetobacter_guillouiae 0.7905694 -0.6250000
#> Acinetobacter_gyllenbergii -0.3952847 -0.3952847
#> Acinetobacter_indicus -0.2500000 0.2236068
#> Acinetobacter_johnsonii -0.2500000 -0.1118034
#> Enterobacter_hormaechei Escherichia_coli
#> Acinetobacter_beijerinckii -0.5441072 0.7071068
#> Acinetobacter_bouvetii 0.9176629 0.7071068
#> Acinetobacter_guillouiae 0.4588315 -0.4472136
#> Acinetobacter_gyllenbergii 0.3590924 0.6000000
#> Acinetobacter_indicus 0.4588315 -0.2000000
#> Acinetobacter_johnsonii 0.5642881 -0.1054093
#> Haemophilus_influenzae Haemophilus_sputorum
#> Acinetobacter_beijerinckii 0.3952847 0.2000000
#> Acinetobacter_bouvetii 0.7905694 0.6708204
#> Acinetobacter_guillouiae 0.7905694 -0.3535534
#> Acinetobacter_gyllenbergii 0.7905694 0.3535534
#> Acinetobacter_indicus 0.3952847 0.8720816
#> Acinetobacter_johnsonii 0.4588315 0.7071068
#> Kocuria_rhizophila Listeria_floridensis
#> Acinetobacter_beijerinckii 0.0000000 -0.5590170
#> Acinetobacter_bouvetii 1.0000000 -0.2500000
#> Acinetobacter_guillouiae -0.5441072 -0.5441072
#> Acinetobacter_gyllenbergii 0.3952847 0.3952847
#> Acinetobacter_indicus 0.7071068 0.7254763
#> Acinetobacter_johnsonii -0.2500000 0.0000000
#> Listeria_grayi Listeria_monocytogenes
#> Acinetobacter_beijerinckii 0.2051957 -0.3952847
#> Acinetobacter_bouvetii 0.1118034 -0.3952847
#> Acinetobacter_guillouiae -0.7071068 0.5000000
#> Acinetobacter_gyllenbergii 0.5000000 0.1250000
#> Acinetobacter_indicus 0.7071068 -0.3441236
#> Acinetobacter_johnsonii -0.2500000 -0.3441236
#> Moraxella_atlantae Moraxella_caprae
#> Acinetobacter_beijerinckii -0.39528471 -0.3535534
#> Acinetobacter_bouvetii -0.12500000 0.3952847
#> Acinetobacter_guillouiae -0.12500000 -0.5441072
#> Acinetobacter_gyllenbergii 0.34412360 0.7071068
#> Acinetobacter_indicus 1.00000000 -0.2500000
#> Acinetobacter_johnsonii -0.05735393 -0.2500000
#> Moraxella_cuniculi Moraxella_porci
#> Acinetobacter_beijerinckii -0.2500000 0.0000000
#> Acinetobacter_bouvetii 0.3952847 -0.2500000
#> Acinetobacter_guillouiae 0.3627381 -0.2500000
#> Acinetobacter_gyllenbergii 1.0000000 -0.3535534
#> Acinetobacter_indicus 0.1863390 -0.2500000
#> Acinetobacter_johnsonii 0.3535534 -0.2500000
#> Mycoplasma_genitalium Mycoplasma_testudinis
#> Acinetobacter_beijerinckii 0.3627381 -0.2500000
#> Acinetobacter_bouvetii 0.7071068 0.3535534
#> Acinetobacter_guillouiae 0.3952847 1.0000000
#> Acinetobacter_gyllenbergii 0.7905694 -0.3952847
#> Acinetobacter_indicus 0.7071068 0.3952847
#> Acinetobacter_johnsonii 0.3952847 1.0000000
#> Noviherbaspirillum_massiliense Other
#> Acinetobacter_beijerinckii 0.8944272 -0.2500000
#> Acinetobacter_bouvetii 0.3354102 1.0000000
#> Acinetobacter_guillouiae -0.4472136 -0.3952847
#> Acinetobacter_gyllenbergii 0.1250000 -0.3952847
#> Acinetobacter_indicus 0.7905694 0.3535534
#> Acinetobacter_johnsonii -0.2236068 -0.3952847
#> Paracoccus_aminophilus Paracoccus_denitrificans
#> Acinetobacter_beijerinckii -0.4472136 0.3441236
#> Acinetobacter_bouvetii -0.7071068 0.9176629
#> Acinetobacter_guillouiae -0.7071068 0.9176629
#> Acinetobacter_gyllenbergii 0.1118034 1.0000000
#> Acinetobacter_indicus -0.5000000 0.5000000
#> Acinetobacter_johnsonii 0.1000000 0.7826238
#> Pseudomonas_fulva Pseudomonas_indica
#> Acinetobacter_beijerinckii 0.8249579 0.8000000
#> Acinetobacter_bouvetii 0.5000000 -0.3000000
#> Acinetobacter_guillouiae 0.7905694 0.3535534
#> Acinetobacter_gyllenbergii 0.6882472 -0.7071068
#> Acinetobacter_indicus 0.7905694 -0.4000000
#> Acinetobacter_johnsonii 0.2236068 0.7071068
#> Pseudomonas_mendocina Pseudomonas_nitroreducens
#> Acinetobacter_beijerinckii -0.5161854 -0.6000000
#> Acinetobacter_bouvetii -0.3952847 0.6708204
#> Acinetobacter_guillouiae -0.5161854 0.9000000
#> Acinetobacter_gyllenbergii 0.7905694 0.2236068
#> Acinetobacter_indicus -0.3952847 0.4472136
#> Acinetobacter_johnsonii -0.3441236 0.7071068
#> Pseudomonas_protegens Pseudomonas_putida
#> Acinetobacter_beijerinckii 0.2236068 0.7254763
#> Acinetobacter_bouvetii 0.4472136 1.0000000
#> Acinetobacter_guillouiae -0.3000000 0.7071068
#> Acinetobacter_gyllenbergii -0.4472136 -0.2500000
#> Acinetobacter_indicus -0.2236068 0.0000000
#> Acinetobacter_johnsonii 0.1000000 -0.2500000
#> Pseudomonas_resinovorans Pseudomonas_syringae
#> Acinetobacter_beijerinckii 0.00000000 -0.2500000
#> Acinetobacter_bouvetii 0.20000000 -0.2500000
#> Acinetobacter_guillouiae -0.35355339 0.7254763
#> Acinetobacter_gyllenbergii 0.00000000 -0.2500000
#> Acinetobacter_indicus 0.05129892 1.0000000
#> Acinetobacter_johnsonii 0.35355339 -0.2500000
#> Staphylococcus_aureus Staphylococcus_capitis
#> Acinetobacter_beijerinckii 0.7905694 -0.3952847
#> Acinetobacter_bouvetii 0.3952847 -0.3952847
#> Acinetobacter_guillouiae 1.0000000 0.7071068
#> Acinetobacter_gyllenbergii 1.0000000 0.7071068
#> Acinetobacter_indicus 1.0000000 0.7071068
#> Acinetobacter_johnsonii -0.3535534 1.0000000
#> Staphylococcus_epidermidis
#> Acinetobacter_beijerinckii 0.3627381
#> Acinetobacter_bouvetii -0.5642881
#> Acinetobacter_guillouiae -0.5441072
#> Acinetobacter_gyllenbergii 0.7254763
#> Acinetobacter_indicus 0.7254763
#> Acinetobacter_johnsonii 0.6882472
#> Staphylococcus_haemolyticus
#> Acinetobacter_beijerinckii -0.7071068
#> Acinetobacter_bouvetii -0.5441072
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii -0.2500000
#> Staphylococcus_lugdunensis
#> Acinetobacter_beijerinckii -0.54410719
#> Acinetobacter_bouvetii 0.72547625
#> Acinetobacter_guillouiae -0.54410719
#> Acinetobacter_gyllenbergii -0.05735393
#> Acinetobacter_indicus -0.88852332
#> Acinetobacter_johnsonii 0.45883147
#> Staphylococcus_pseudintermedius
#> Acinetobacter_beijerinckii -0.25
#> Acinetobacter_bouvetii -0.25
#> Acinetobacter_guillouiae 0.00
#> Acinetobacter_gyllenbergii 0.00
#> Acinetobacter_indicus 0.00
#> Acinetobacter_johnsonii -0.25
#> Staphylococcus_saprophyticus Staphylococcus_simiae
#> Acinetobacter_beijerinckii 0.7071068 0.7905694
#> Acinetobacter_bouvetii 0.7071068 0.7905694
#> Acinetobacter_guillouiae 1.0000000 0.5000000
#> Acinetobacter_gyllenbergii 0.3535534 0.5000000
#> Acinetobacter_indicus -0.3535534 0.0000000
#> Acinetobacter_johnsonii -0.2500000 0.3441236
#> Streptococcus_anginosus Streptococcus_cristatus
#> Acinetobacter_beijerinckii 0.6123724 0.5161854
#> Acinetobacter_bouvetii -0.4082483 -0.1480872
#> Acinetobacter_guillouiae 0.6123724 -0.3441236
#> Acinetobacter_gyllenbergii 0.6123724 1.0000000
#> Acinetobacter_indicus -0.6454972 0.1351845
#> Acinetobacter_johnsonii 0.3227486 0.8603090
#> Streptococcus_gallolyticus Streptococcus_mitis
#> Acinetobacter_beijerinckii 0.9733285 0.3535534
#> Acinetobacter_bouvetii -0.8922178 -0.3535534
#> Acinetobacter_guillouiae 0.7453560 -0.2500000
#> Acinetobacter_gyllenbergii -0.1081476 1.0000000
#> Acinetobacter_indicus 0.9486833 0.7254763
#> Acinetobacter_johnsonii 0.1054093 1.0000000
#> Streptococcus_mutans Streptococcus_parasanguinis
#> Acinetobacter_beijerinckii 0.68824720 1.0000000
#> Acinetobacter_bouvetii -0.02631579 -0.3952847
#> Acinetobacter_guillouiae 0.34210526 0.7905694
#> Acinetobacter_gyllenbergii 0.46169026 0.8720816
#> Acinetobacter_indicus -0.46169026 0.6708204
#> Acinetobacter_johnsonii 0.68824720 0.2236068
#> Streptococcus_pyogenes Streptococcus_sanguinis
#> Acinetobacter_beijerinckii 0.5441072 0.1538968
#> Acinetobacter_bouvetii -0.5590170 0.3000000
#> Acinetobacter_guillouiae 0.3952847 -0.3000000
#> Acinetobacter_gyllenbergii -0.2500000 0.0000000
#> Acinetobacter_indicus -0.5441072 -0.3535534
#> Acinetobacter_johnsonii -0.2500000 -0.6000000
#> Streptococcus_sobrinus Streptococcus_suis
#> Acinetobacter_beijerinckii 1.0000000 0.7071068
#> Acinetobacter_bouvetii 0.7254763 -0.7071068
#> Acinetobacter_guillouiae 1.0000000 0.7905694
#> Acinetobacter_gyllenbergii 0.7254763 0.7071068
#> Acinetobacter_indicus -0.2500000 0.7905694
#> Acinetobacter_johnsonii 1.0000000 0.3952847
#> Streptococcus_thermophilus Weissella_koreensis
#> Acinetobacter_beijerinckii 0.3441236 0.36273813
#> Acinetobacter_bouvetii 0.5000000 -0.02631579
#> Acinetobacter_guillouiae 1.0000000 0.36273813
#> Acinetobacter_gyllenbergii 0.1118034 -0.15389675
#> Acinetobacter_indicus -0.6250000 0.72547625
#> Acinetobacter_johnsonii -0.1250000 -0.66688593
#> Weissella_oryzae Weissella_paramesenteroides
#> Acinetobacter_beijerinckii 0.7254763 -0.9746794
#> Acinetobacter_bouvetii 0.3627381 0.7071068
#> Acinetobacter_guillouiae 0.9746794 -0.7071068
#> Acinetobacter_gyllenbergii -0.5441072 0.4103913
#> Acinetobacter_indicus 0.8207827 0.0000000
#> Acinetobacter_johnsonii 1.0000000 0.3535534
#>
#> , , S9
#>
#> Acinetobacter_beijerinckii Acinetobacter_bouvetii
#> Acinetobacter_beijerinckii 0.4472136 0.3354102
#> Acinetobacter_bouvetii 0.5000000 0.1250000
#> Acinetobacter_guillouiae 0.8750000 0.1250000
#> Acinetobacter_gyllenbergii 0.7905694 0.2236068
#> Acinetobacter_indicus 0.7905694 0.8944272
#> Acinetobacter_johnsonii 0.7905694 0.6708204
#> Acinetobacter_guillouiae Acinetobacter_gyllenbergii
#> Acinetobacter_beijerinckii -0.2236068 -0.2500000
#> Acinetobacter_bouvetii -0.3952847 0.7071068
#> Acinetobacter_guillouiae -0.6708204 0.7254763
#> Acinetobacter_gyllenbergii -0.3952847 1.0000000
#> Acinetobacter_indicus 0.3952847 1.0000000
#> Acinetobacter_johnsonii 0.3952847 -0.2500000
#> Acinetobacter_indicus Acinetobacter_johnsonii
#> Acinetobacter_beijerinckii -0.5441072 -0.3535534
#> Acinetobacter_bouvetii -0.2500000 -0.3535534
#> Acinetobacter_guillouiae -0.2500000 -0.3535534
#> Acinetobacter_gyllenbergii 1.0000000 1.0000000
#> Acinetobacter_indicus 0.7905694 -0.1025978
#> Acinetobacter_johnsonii 0.6123724 0.2051957
#> Acinetobacter_parvus Acinetobacter_pittii
#> Acinetobacter_beijerinckii -0.9746794 -0.2500000
#> Acinetobacter_bouvetii -0.3077935 1.0000000
#> Acinetobacter_guillouiae 0.1025978 1.0000000
#> Acinetobacter_gyllenbergii -0.5441072 0.7905694
#> Acinetobacter_indicus 0.4103913 0.7905694
#> Acinetobacter_johnsonii -0.1538968 0.3627381
#> Acinetobacter_radioresistens Acinetobacter_towneri
#> Acinetobacter_beijerinckii 0.0000000 0.7071068
#> Acinetobacter_bouvetii 0.0000000 0.2236068
#> Acinetobacter_guillouiae 0.3627381 0.2886751
#> Acinetobacter_gyllenbergii 0.0000000 -0.4472136
#> Acinetobacter_indicus 0.0000000 0.6668859
#> Acinetobacter_johnsonii 0.0000000 0.1054093
#> Acinetobacter_ursingii Aeromonas_hydrophila
#> Acinetobacter_beijerinckii -0.3535534 0.7071068
#> Acinetobacter_bouvetii 0.7254763 0.2000000
#> Acinetobacter_guillouiae -0.5441072 -0.9000000
#> Acinetobacter_gyllenbergii 1.0000000 -0.7071068
#> Acinetobacter_indicus 0.0000000 0.7071068
#> Acinetobacter_johnsonii 0.7071068 0.9746794
#> Aeromonas_salmonicida Alkalihalophilus_pseudofirmus
#> Acinetobacter_beijerinckii -0.3952847 0.7071068
#> Acinetobacter_bouvetii -0.3952847 0.7071068
#> Acinetobacter_guillouiae -0.5441072 -0.4472136
#> Acinetobacter_gyllenbergii -0.5441072 0.6708204
#> Acinetobacter_indicus -0.3535534 0.1052632
#> Acinetobacter_johnsonii 0.3535534 0.3441236
#> Brucella_anthropi Brucella_melitensis
#> Acinetobacter_beijerinckii -0.3952847 1.0000000
#> Acinetobacter_bouvetii 0.5441072 0.0000000
#> Acinetobacter_guillouiae 0.7453560 0.7071068
#> Acinetobacter_gyllenbergii 0.7905694 0.7071068
#> Acinetobacter_indicus 1.0000000 1.0000000
#> Acinetobacter_johnsonii 0.7254763 -0.2500000
#> Corynebacterium_accolens
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii 1.0000000
#> Acinetobacter_guillouiae 0.7254763
#> Acinetobacter_gyllenbergii 1.0000000
#> Acinetobacter_indicus 0.7254763
#> Acinetobacter_johnsonii -0.2500000
#> Corynebacterium_ammoniagenes
#> Acinetobacter_beijerinckii 0.7254763
#> Acinetobacter_bouvetii 0.7071068
#> Acinetobacter_guillouiae -0.7071068
#> Acinetobacter_gyllenbergii 0.7905694
#> Acinetobacter_indicus 0.7071068
#> Acinetobacter_johnsonii 0.7905694
#> Corynebacterium_appendicis
#> Acinetobacter_beijerinckii 0.1250000
#> Acinetobacter_bouvetii 0.9176629
#> Acinetobacter_guillouiae 1.0000000
#> Acinetobacter_gyllenbergii 0.5000000
#> Acinetobacter_indicus 0.7826238
#> Acinetobacter_johnsonii -0.1250000
#> Corynebacterium_argentoratense
#> Acinetobacter_beijerinckii -0.7071068
#> Acinetobacter_bouvetii 0.4472136
#> Acinetobacter_guillouiae 0.0000000
#> Acinetobacter_gyllenbergii 0.1054093
#> Acinetobacter_indicus 0.3535534
#> Acinetobacter_johnsonii -0.8000000
#> Corynebacterium_aurimucosum Corynebacterium_callunae
#> Acinetobacter_beijerinckii 0.4588315 -0.64888568
#> Acinetobacter_bouvetii 0.3952847 -0.05735393
#> Acinetobacter_guillouiae 0.3952847 -0.54410719
#> Acinetobacter_gyllenbergii 0.1250000 0.87208160
#> Acinetobacter_indicus -0.3952847 0.72547625
#> Acinetobacter_johnsonii 0.6708204 -0.51618540
#> Corynebacterium_casei Corynebacterium_ciconiae
#> Acinetobacter_beijerinckii 0.0000000 -0.2500000
#> Acinetobacter_bouvetii -0.3952847 -0.2500000
#> Acinetobacter_guillouiae 0.0000000 0.3952847
#> Acinetobacter_gyllenbergii -0.2500000 -0.2500000
#> Acinetobacter_indicus 0.7254763 0.1863390
#> Acinetobacter_johnsonii 1.0000000 -0.3952847
#> Corynebacterium_deserti Corynebacterium_durum
#> Acinetobacter_beijerinckii 0.3535534 -0.8603090
#> Acinetobacter_bouvetii 0.7826238 -0.3952847
#> Acinetobacter_guillouiae -0.9000000 0.5000000
#> Acinetobacter_gyllenbergii 0.6708204 0.5000000
#> Acinetobacter_indicus -0.3000000 0.3952847
#> Acinetobacter_johnsonii -0.1118034 0.7905694
#> Corynebacterium_efficiens Corynebacterium_falsenii
#> Acinetobacter_beijerinckii -0.3952847 1.0000000
#> Acinetobacter_bouvetii -0.1813691 0.3535534
#> Acinetobacter_guillouiae -0.3952847 0.7000000
#> Acinetobacter_gyllenbergii -0.2500000 0.0000000
#> Acinetobacter_indicus -0.2500000 -0.8720816
#> Acinetobacter_johnsonii -0.3952847 0.0000000
#> Corynebacterium_freneyi Corynebacterium_genitalium
#> Acinetobacter_beijerinckii 0.3627381 0.1813691
#> Acinetobacter_bouvetii -0.2500000 -0.3952847
#> Acinetobacter_guillouiae -0.2500000 -0.2500000
#> Acinetobacter_gyllenbergii 0.3535534 -0.7071068
#> Acinetobacter_indicus -0.3952847 0.0000000
#> Acinetobacter_johnsonii -0.1813691 -0.2500000
#> Corynebacterium_glutamicum
#> Acinetobacter_beijerinckii -0.5441072
#> Acinetobacter_bouvetii 0.7254763
#> Acinetobacter_guillouiae -0.8603090
#> Acinetobacter_gyllenbergii 0.4103913
#> Acinetobacter_indicus 0.2894737
#> Acinetobacter_johnsonii 0.0000000
#> Corynebacterium_glyciniphilum
#> Acinetobacter_beijerinckii 0.3952847
#> Acinetobacter_bouvetii -0.1250000
#> Acinetobacter_guillouiae 0.3952847
#> Acinetobacter_gyllenbergii -0.2236068
#> Acinetobacter_indicus -0.2294157
#> Acinetobacter_johnsonii 0.5000000
#> Corynebacterium_jeikeium Corynebacterium_lactis
#> Acinetobacter_beijerinckii 0.8029551 0.7071068
#> Acinetobacter_bouvetii -0.3952847 -0.3952847
#> Acinetobacter_guillouiae 0.5735393 -0.2500000
#> Acinetobacter_gyllenbergii 0.6708204 0.0000000
#> Acinetobacter_indicus -0.3952847 -0.2500000
#> Acinetobacter_johnsonii 0.3952847 -0.3952847
#> Corynebacterium_lipophiloflavum
#> Acinetobacter_beijerinckii 0.7905694
#> Acinetobacter_bouvetii -0.2236068
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii -0.3952847
#> Acinetobacter_indicus -0.3441236
#> Acinetobacter_johnsonii 0.3952847
#> Corynebacterium_maris Corynebacterium_matruchotii
#> Acinetobacter_beijerinckii -0.2500000 0.3952847
#> Acinetobacter_bouvetii 0.7071068 -0.6250000
#> Acinetobacter_guillouiae 0.1813691 -0.3952847
#> Acinetobacter_gyllenbergii -0.3535534 -0.4124790
#> Acinetobacter_indicus 0.9486833 0.7905694
#> Acinetobacter_johnsonii 0.2946278 0.2236068
#> Corynebacterium_nuruki Corynebacterium_otitidis
#> Acinetobacter_beijerinckii 0.0000000 -0.5590170
#> Acinetobacter_bouvetii -0.2500000 0.3952847
#> Acinetobacter_guillouiae -0.2500000 -0.2500000
#> Acinetobacter_gyllenbergii 0.3952847 0.3535534
#> Acinetobacter_indicus -0.2500000 1.0000000
#> Acinetobacter_johnsonii 0.7071068 -0.3952847
#> Corynebacterium_pseudodiphtheriticum
#> Acinetobacter_beijerinckii 0.4472136
#> Acinetobacter_bouvetii -0.6250000
#> Acinetobacter_guillouiae -0.4472136
#> Acinetobacter_gyllenbergii -0.3952847
#> Acinetobacter_indicus 0.9176629
#> Acinetobacter_johnsonii 0.7905694
#> Corynebacterium_pyruviciproducens
#> Acinetobacter_beijerinckii 0.1863390
#> Acinetobacter_bouvetii 0.7453560
#> Acinetobacter_guillouiae -0.8838835
#> Acinetobacter_gyllenbergii -0.5590170
#> Acinetobacter_indicus 0.1111111
#> Acinetobacter_johnsonii -0.4124790
#> Corynebacterium_sphenisci
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii -0.3952847
#> Acinetobacter_guillouiae 0.0000000
#> Acinetobacter_gyllenbergii 0.3952847
#> Acinetobacter_indicus 0.3535534
#> Acinetobacter_johnsonii -0.3952847
#> Corynebacterium_terpenotabidum
#> Acinetobacter_beijerinckii 0.7254763
#> Acinetobacter_bouvetii -0.2500000
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii 0.3952847
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii -0.2500000
#> Corynebacterium_timonense
#> Acinetobacter_beijerinckii -0.3952847
#> Acinetobacter_bouvetii -0.1813691
#> Acinetobacter_guillouiae -0.3952847
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus -0.2500000
#> Acinetobacter_johnsonii -0.3952847
#> Corynebacterium_tuscaniense
#> Acinetobacter_beijerinckii -0.7071068
#> Acinetobacter_bouvetii -0.2500000
#> Acinetobacter_guillouiae -0.7071068
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus 0.3627381
#> Acinetobacter_johnsonii -0.2500000
#> Corynebacterium_urealyticum
#> Acinetobacter_beijerinckii 0.26315789
#> Acinetobacter_bouvetii 0.36273813
#> Acinetobacter_guillouiae 0.36273813
#> Acinetobacter_gyllenbergii -0.05129892
#> Acinetobacter_indicus 0.22941573
#> Acinetobacter_johnsonii 0.02631579
#> Corynebacterium_variabile Corynebacterium_xerosis
#> Acinetobacter_beijerinckii -0.7254763 -0.2500000
#> Acinetobacter_bouvetii 0.3952847 1.0000000
#> Acinetobacter_guillouiae -0.2500000 -0.3952847
#> Acinetobacter_gyllenbergii 0.7071068 0.3535534
#> Acinetobacter_indicus 0.7071068 0.0000000
#> Acinetobacter_johnsonii -0.2500000 -0.2500000
#> Cutibacterium_avidum Delftia_acidovorans
#> Acinetobacter_beijerinckii -0.3535534 0.02631579
#> Acinetobacter_bouvetii -0.8944272 0.72547625
#> Acinetobacter_guillouiae -0.3535534 0.26315789
#> Acinetobacter_gyllenbergii 0.1000000 -0.20519567
#> Acinetobacter_indicus 0.6668859 -0.54410719
#> Acinetobacter_johnsonii -0.4472136 0.00000000
#> Dolosigranulum_pigrum Enterobacter_cloacae
#> Acinetobacter_beijerinckii 0.3535534 0.0000000
#> Acinetobacter_bouvetii 0.7905694 0.0000000
#> Acinetobacter_guillouiae -0.2500000 -0.3535534
#> Acinetobacter_gyllenbergii -0.5441072 0.3535534
#> Acinetobacter_indicus -0.2500000 -0.1025978
#> Acinetobacter_johnsonii -0.3952847 -0.7071068
#> Enterobacter_hormaechei Escherichia_coli
#> Acinetobacter_beijerinckii 0.39528471 0.7905694
#> Acinetobacter_bouvetii 0.22360680 -0.6250000
#> Acinetobacter_guillouiae 0.28676967 -0.3952847
#> Acinetobacter_gyllenbergii -0.33541020 -0.1767767
#> Acinetobacter_indicus -0.05129892 0.3952847
#> Acinetobacter_johnsonii 0.22941573 0.3354102
#> Haemophilus_influenzae Haemophilus_sputorum
#> Acinetobacter_beijerinckii -0.5441072 -0.4124790
#> Acinetobacter_bouvetii -0.2500000 -0.6250000
#> Acinetobacter_guillouiae -0.2500000 -0.3952847
#> Acinetobacter_gyllenbergii -0.3952847 0.4472136
#> Acinetobacter_indicus 1.0000000 -0.3952847
#> Acinetobacter_johnsonii -0.7071068 0.1250000
#> Kocuria_rhizophila Listeria_floridensis
#> Acinetobacter_beijerinckii -0.1000000 -0.7071068
#> Acinetobacter_bouvetii 0.4472136 0.7071068
#> Acinetobacter_guillouiae -0.5000000 0.3354102
#> Acinetobacter_gyllenbergii 0.7071068 0.3535534
#> Acinetobacter_indicus -0.4616903 0.9486833
#> Acinetobacter_johnsonii -0.7071068 -0.1118034
#> Listeria_grayi Listeria_monocytogenes
#> Acinetobacter_beijerinckii 0.3952847 -0.5441072
#> Acinetobacter_bouvetii 0.1250000 -0.2500000
#> Acinetobacter_guillouiae 0.4472136 -0.3952847
#> Acinetobacter_gyllenbergii -0.6250000 -0.3952847
#> Acinetobacter_indicus -0.8944272 1.0000000
#> Acinetobacter_johnsonii 1.0000000 -0.2500000
#> Moraxella_atlantae Moraxella_caprae
#> Acinetobacter_beijerinckii -0.34412360 -0.7071068
#> Acinetobacter_bouvetii -0.55263158 -0.2500000
#> Acinetobacter_guillouiae -0.51618540 -0.7071068
#> Acinetobacter_gyllenbergii -0.54410719 -0.2500000
#> Acinetobacter_indicus -0.54410719 0.3627381
#> Acinetobacter_johnsonii -0.05735393 -0.2500000
#> Moraxella_cuniculi Moraxella_porci
#> Acinetobacter_beijerinckii 0.0000000 -0.4103913
#> Acinetobacter_bouvetii 0.3952847 -0.1118034
#> Acinetobacter_guillouiae 0.3952847 -0.3535534
#> Acinetobacter_gyllenbergii 0.3354102 -0.4000000
#> Acinetobacter_indicus 0.1250000 0.3000000
#> Acinetobacter_johnsonii 0.2867697 -0.3535534
#> Mycoplasma_genitalium Mycoplasma_testudinis
#> Acinetobacter_beijerinckii -0.7254763 -0.3952847
#> Acinetobacter_bouvetii 0.1813691 0.7905694
#> Acinetobacter_guillouiae -0.2294157 0.3354102
#> Acinetobacter_gyllenbergii 0.6668859 -0.2236068
#> Acinetobacter_indicus 0.2368421 -0.8603090
#> Acinetobacter_johnsonii 0.1813691 -0.3952847
#> Noviherbaspirillum_massiliense Other
#> Acinetobacter_beijerinckii 0.1250000 0.3952847
#> Acinetobacter_bouvetii 0.8029551 0.1250000
#> Acinetobacter_guillouiae -0.3952847 0.7905694
#> Acinetobacter_gyllenbergii 0.6708204 -0.3952847
#> Acinetobacter_indicus 0.5000000 -0.4472136
#> Acinetobacter_johnsonii -0.2236068 0.3354102
#> Paracoccus_aminophilus Paracoccus_denitrificans
#> Acinetobacter_beijerinckii 1.0000000 0.3952847
#> Acinetobacter_bouvetii -0.2500000 0.1813691
#> Acinetobacter_guillouiae -0.7071068 1.0000000
#> Acinetobacter_gyllenbergii -0.3535534 0.3535534
#> Acinetobacter_indicus 0.0000000 -0.3952847
#> Acinetobacter_johnsonii 1.0000000 0.0000000
#> Pseudomonas_fulva Pseudomonas_indica
#> Acinetobacter_beijerinckii 0.3535534 0.0000000
#> Acinetobacter_bouvetii 0.7826238 -0.5441072
#> Acinetobacter_guillouiae -0.3535534 0.1538968
#> Acinetobacter_gyllenbergii -0.7071068 0.2051957
#> Acinetobacter_indicus 0.4000000 1.0000000
#> Acinetobacter_johnsonii -0.3000000 0.0000000
#> Pseudomonas_mendocina Pseudomonas_nitroreducens
#> Acinetobacter_beijerinckii -0.3952847 0.7905694
#> Acinetobacter_bouvetii 0.7254763 0.5000000
#> Acinetobacter_guillouiae -0.2500000 -0.3952847
#> Acinetobacter_gyllenbergii 0.7071068 -0.3952847
#> Acinetobacter_indicus 0.7905694 -0.4472136
#> Acinetobacter_johnsonii -0.7071068 0.4472136
#> Pseudomonas_protegens Pseudomonas_putida
#> Acinetobacter_beijerinckii 0.0000000 -0.2867697
#> Acinetobacter_bouvetii -0.7071068 0.7105263
#> Acinetobacter_guillouiae -0.6000000 0.3627381
#> Acinetobacter_gyllenbergii 0.5000000 0.8207827
#> Acinetobacter_indicus 0.1538968 0.6882472
#> Acinetobacter_johnsonii 0.0000000 -0.5642881
#> Pseudomonas_resinovorans Pseudomonas_syringae
#> Acinetobacter_beijerinckii 1.0000000 -0.5441072
#> Acinetobacter_bouvetii 0.7905694 0.3627381
#> Acinetobacter_guillouiae -0.2500000 0.8207827
#> Acinetobacter_gyllenbergii -0.2500000 -0.1538968
#> Acinetobacter_indicus -0.7071068 0.5000000
#> Acinetobacter_johnsonii 0.0000000 -0.5441072
#> Staphylococcus_aureus Staphylococcus_capitis
#> Acinetobacter_beijerinckii 0.3952847 0.7905694
#> Acinetobacter_bouvetii 0.1813691 1.0000000
#> Acinetobacter_guillouiae 1.0000000 -0.3952847
#> Acinetobacter_gyllenbergii 0.3535534 -0.3952847
#> Acinetobacter_indicus -0.3952847 -0.2236068
#> Acinetobacter_johnsonii 0.0000000 -0.4472136
#> Staphylococcus_epidermidis
#> Acinetobacter_beijerinckii 0.3952847
#> Acinetobacter_bouvetii -0.3952847
#> Acinetobacter_guillouiae -0.7826238
#> Acinetobacter_gyllenbergii -0.2236068
#> Acinetobacter_indicus 0.3441236
#> Acinetobacter_johnsonii 0.3952847
#> Staphylococcus_haemolyticus
#> Acinetobacter_beijerinckii 0.7905694
#> Acinetobacter_bouvetii 0.1813691
#> Acinetobacter_guillouiae -0.2500000
#> Acinetobacter_gyllenbergii 0.0000000
#> Acinetobacter_indicus -0.3952847
#> Acinetobacter_johnsonii 0.7071068
#> Staphylococcus_lugdunensis
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii -0.3952847
#> Acinetobacter_guillouiae 1.0000000
#> Acinetobacter_gyllenbergii -0.2500000
#> Acinetobacter_indicus 0.0000000
#> Acinetobacter_johnsonii 0.3535534
#> Staphylococcus_pseudintermedius
#> Acinetobacter_beijerinckii -0.2500000
#> Acinetobacter_bouvetii -0.2500000
#> Acinetobacter_guillouiae -0.3535534
#> Acinetobacter_gyllenbergii 0.0000000
#> Acinetobacter_indicus 0.3627381
#> Acinetobacter_johnsonii -0.2500000
#> Staphylococcus_saprophyticus Staphylococcus_simiae
#> Acinetobacter_beijerinckii 0.8750000 -0.2500000
#> Acinetobacter_bouvetii 0.2867697 -0.3952847
#> Acinetobacter_guillouiae 0.7905694 -0.2500000
#> Acinetobacter_gyllenbergii 0.3354102 1.0000000
#> Acinetobacter_indicus -0.6250000 -0.3535534
#> Acinetobacter_johnsonii 0.4472136 -0.3535534
#> Streptococcus_anginosus Streptococcus_cristatus
#> Acinetobacter_beijerinckii -0.39528471 1.0000000
#> Acinetobacter_bouvetii -0.39528471 0.2867697
#> Acinetobacter_guillouiae 0.44721360 0.3952847
#> Acinetobacter_gyllenbergii 0.89442719 0.2236068
#> Acinetobacter_indicus -0.05735393 -0.6250000
#> Acinetobacter_johnsonii -0.39528471 0.6708204
#> Streptococcus_gallolyticus Streptococcus_mitis
#> Acinetobacter_beijerinckii 0.1813691 0.7071068
#> Acinetobacter_bouvetii -0.2867697 0.3535534
#> Acinetobacter_guillouiae -0.3627381 -0.6000000
#> Acinetobacter_gyllenbergii 0.7254763 -0.6000000
#> Acinetobacter_indicus -0.6668859 -0.6668859
#> Acinetobacter_johnsonii 0.2051957 0.7071068
#> Streptococcus_mutans Streptococcus_parasanguinis
#> Acinetobacter_beijerinckii -0.6250000 0.0000000
#> Acinetobacter_bouvetii 0.4588315 -0.2236068
#> Acinetobacter_guillouiae -0.3952847 0.3535534
#> Acinetobacter_gyllenbergii 0.4472136 -0.7071068
#> Acinetobacter_indicus 1.0000000 0.2000000
#> Acinetobacter_johnsonii -0.4472136 0.9000000
#> Streptococcus_pyogenes Streptococcus_sanguinis
#> Acinetobacter_beijerinckii 1.0000000 0.34412360
#> Acinetobacter_bouvetii -0.2500000 0.39473684
#> Acinetobacter_guillouiae -0.7071068 -0.54410719
#> Acinetobacter_gyllenbergii -0.3535534 0.20519567
#> Acinetobacter_indicus 0.0000000 0.00000000
#> Acinetobacter_johnsonii 1.0000000 0.05129892
#> Streptococcus_sobrinus Streptococcus_suis
#> Acinetobacter_beijerinckii 1.0000000 0.3952847
#> Acinetobacter_bouvetii 0.7905694 -0.3952847
#> Acinetobacter_guillouiae -0.2500000 0.2236068
#> Acinetobacter_gyllenbergii -0.2500000 0.1118034
#> Acinetobacter_indicus -0.7071068 0.6882472
#> Acinetobacter_johnsonii 0.0000000 0.3952847
#> Streptococcus_thermophilus Weissella_koreensis
#> Acinetobacter_beijerinckii -0.6250000 -0.2500000
#> Acinetobacter_bouvetii 0.4588315 0.3952847
#> Acinetobacter_guillouiae -0.3952847 -0.2500000
#> Acinetobacter_gyllenbergii 0.4472136 -0.2500000
#> Acinetobacter_indicus 1.0000000 0.7071068
#> Acinetobacter_johnsonii -0.4472136 -0.7071068
#> Weissella_oryzae Weissella_paramesenteroides
#> Acinetobacter_beijerinckii -0.2500000 -0.1118034
#> Acinetobacter_bouvetii -0.2500000 -0.4616903
#> Acinetobacter_guillouiae -0.3535534 -0.7071068
#> Acinetobacter_gyllenbergii 0.0000000 -0.6000000
#> Acinetobacter_indicus 0.3627381 0.1118034
#> Acinetobacter_johnsonii -0.2500000 0.6000000
#>